Chemistry: natural resins or derivatives; peptides or proteins; – Proteins – i.e. – more than 100 amino acid residues – Blood proteins or globulins – e.g. – proteoglycans – platelet...
Reexamination Certificate
2000-05-01
2002-04-09
McGarry, Sean (Department: 1635)
Chemistry: natural resins or derivatives; peptides or proteins;
Proteins, i.e., more than 100 amino acid residues
Blood proteins or globulins, e.g., proteoglycans, platelet...
C530S387300, C530S388850
Reexamination Certificate
active
06369202
ABSTRACT:
BACKGROUND
1. Field of the Invention
This invention relates to novel polypeptides having DNA binding activity, and to nucleic acid molecules encoding the polypeptides. The polypeptides, previously referred to as “IRF-3” polypeptides, are now referred to as “LSIRF” polypeptides (lymphocyte specific interferon regulatory factor), and are new members of the class of polypeptides known as interferon regulatory factors.
2. Description of Related Art
Regulation of gene expression can occur at several different levels, but the activation of gene-specific transcription factors is considered the most fundamental to this process. One family of transcription factors, the interferon regulatory factors (IRFs), consists of four members: IRF-1, IRF-2, ISGF3&ggr;, and ICSBP. All four IRFs are characterized by a strongly conserved, N-terminal DNA-binding domain containing a repeated tryptophan motif (Veals et al., (
Mol. Cell. Biol
., 12:3315-3324 [1992]).
Interferon regulatory factors-1 (IRF-1) and -2 (IRF-2) were originally identified by studies of the transcriptional regulation of the human interferon-beta (IFN-&bgr;) gene (Miyamoto et al.,
Cell
, 54:903-913 [1988]) and (Harada et al.,
Cell
, 58:729-739 [1989]). cDNA expression studies have demonstrated that IRF-1 functions as a transcriptional activator of IFN and IFN-inducible genes, whereas IRF-2 represses the effect of IRF-1 (Fujita et al.,
Nature
, 337:270-272 [1989]) and (Harada et al.,
Cell
, 63:303-312 [1990]). Recent analyses have shown that IRF-1 can also act as a tumor suppressor gene and IRF-2 as a possible oncogene (Harada et al,
Science
, 259:971-974 [1993]). IRF-1 expression is induced by type-I (&agr;/&bgr;) and type-II (&ggr;) IFNs (Miyamoto et al.,
Cell
, 54:903-913 [1988]; Kanno et al.,
Mol. Cell Biol
., 13:3951-3963 [1993]), whereas IRF-2 is both constitutively expressed and induced by type-I IFNs (Harada et al.,
Cell
, 58:729-739 [1989]).
Interferon-stimulated gene factor-3 gamma (ISGF3&ggr;) is an IFN-&ggr;-inducible protein which associates with ISGF3&agr; subunits activated from a latent cytosolic form by type-I IFNs (Levy et al,
EMBO J
., 9:1105-1111 [1990]; Levy et al.,
New Biologist
, 2:383-392 [1990]). Upon association, this complex has been shown to translocate to the nucleus and bind a specific DNA sequence found in the promoter region of IFN-inducible genes, known as the ISRE (IFN-stimulated response element; Veals et al.,
Mol. Cell. Biol
., 12:3315-3324 [1992]). Recently, ISGF3&agr; subunits of 91/84 kDa and 113 kDa have been cloned (Schindler et al,
Proc. Natl. Acad. Sci. USA
, 89:7836-7839 [1992]; Fu et al,
Proc. Natl. Acad. Sci. USA
, 89:7840-7843 [1992]) and designated as signal transducer and activator of transcription-1 (Stat-1) and -2 (Stat-2), respectively, which are targets of JAK kinase phosphorylation following type-I IFN/IFN-receptor engagement (Shuai et al,
Science
, 261:1744-1746 [1993]; Darnell et al,
Science
, 261:1415-1421 [1994]).
Interferon consensus sequence binding protein (ICSBP) is also an IFN-&ggr;-inducible protein, originally isolated as a protein that recognizes the ISRE motif (also called ICS) of the promoter of murine MHC class I, H-2L
D
gene (Driggers et al,
Proc. Natl. Acad. Sci. USA
, 87:3743-3747 [1990]). However, unlike IRF-1, IRF-2, and ISGF3&ggr;, ICSBP exhibits a tissue-restricted pattern of expression, as it is induced exclusively in cells of macrophage and lymphoid lineages (Driggers et al,
Proc. Natl. Acad. Sci. USA
, 87:3743-3747 [1990]). Recent studies have suggested that ICSBP has a similar role to IRF-2 in antagonizing the effect of IRF-1 on the induction of IFN and IFN-inducible genes (Weisz et al.,
J. Biol. Chem
., 267:25589-25596 [1992]; Nelson et al.,
Mol. Cell. Biol
., 13:588-599 [1993]). The ISREs of interferon-inducible genes overlap IRF-E, the DNA sequences recognized by IRF-1 and -2 (Tanaka et al.,
Mol Cell. Biol
. 13:4531-4538 [1993]). Very recently, ISGF3&ggr; was shown to bind the IRF-Es of the IFN-&bgr; gene (Kawakami et al.,
FEBS Letters
, 358:225-229 [1995]).
In view of the importance of IRFs in regulating the expression of the interferon genes and other genes, there is a need in the art to identify other IRFs, especially tissue specific IRFS.
Accordingly, it is an object of this invention to identify novel members of the IRF gene family.
Other objects will be readily apparent to one of ordinary skill in the art.
SUMMARY OF THE INVENTION
The present invention provides novel nucleic acid molecules encoding a lymphocyte specific interferon regulatory factor. The molecules, which were previously referred to as “IRF-3” molecules, are now referred to as “LSIRF” molecules, however this term may be used interchangeably with the term “LSIRF” molecules.
In one aspect, the present invention provides an isolated nucleic acid molecule encoding a LSIRF polypeptide or fragment thereof, selected from the group consisting of:
a) a nucleic acid molecule having a nucleotide sequence of SEQ. ID. NO: 1;
b) a nucleic acid molecule having a nucleotide sequence of SEQ. ID. NO: 4;
c) a nucleic acid molecule having a nucleotide sequence of SEQ. ID. NO: 24 or the “Double Q” variant thereof;
d) a nucleic acid molecule having a nucleotide sequence encoding the amino acid sequence of SEQ. ID. NO: 2;
e) a nucleic acid molecule having a nucleotide sequence encoding the amino acid sequence of SEQ. ID. NO: 25 or the “Double Q” variant thereof; and
f) a nucleic acid molecule having a nucleotide sequence which hybridizes with the nucleic acid molecule of (a), (b), (c), (d), (e), or with a fragment thereof.
The invention further provides a polypeptide that is the product of the expression of these nucleic acid molecules in a host cell.
Still further, the invention provides an antibody specifically binding the LSIRF polypeptide. Optionally, the antibody is a monoclonal antibody.
In another aspect, the invention provides an isolated polypeptide or fragment thereof having the specific DNA binding activity of a LSIRF polypeptide.
In another aspect, the present invention provides a vector comprising a DNA molecule encoding a LSIRF polypeptide.
In still another aspect, the invention provides a host cell stably transformed or transfected with a vector comprising a DNA molecule encoding a LSIRF polypeptide.
In yet another aspect, the invention provides an isolated LSIRF polypeptide or fragment thereof; the polypeptide may have the amino acid sequence of SEQ ID NO: 2.
In a further aspect, the invention provides a LSIRF polypeptide that is the product of a prokaryotic or eukaryotic host cell expression of an exogenous LSIRF nucleic acid sequence.
The invention further provides a method of producing a LSIRF polypeptide comprising culturing a prokaryotic or eukaryotic host cell under conditions that permit LSIRF expression.
REFERENCES:
Berendsen, H., “A Glimpse of the Holy Grail?”,Science, vol. 282: 642-643 (1998).
Driggers et al, “An interferon &ggr;-regulated protein that binds the interferon-inducible enhancer element of major histocompatibility complex class I genes”,Proc. Natl. Acad. Sci. USA, 87: 3743-3747 (1990).
Eisenbeis et al, “Pip, a novel IRF family member, is a lymphoid-specific, PU.1-dependent transcriptional activator”,Genes&Development, 9: 1377-1387 (1995).
Harada et al, “Structurally Similar but Functionally Distinct Factors, IRF-1 and IRF-2, Bind to the Same Regulatory Elements of IFN and IFN-Inducible Genes”,Cell, 58: 729-739 (1989).
Matsuyama et al., Molecular cloning of LSIRF, a lymphoid-specific member of the interferon regulatory factor family that binds the interferon-stimulated response element (ISRE),Nucleic Acids Research, vol. 23, No. 12, pp. 2127-2136, 1995.
Miyamoto et al, “Regulated Expression of a Gene Encoding a Nuclear Factor, IRF-1, That Specifically Binds to IFN-&bgr; Gene Regulatory Elements”,Cell, 54: 903-913 (1988
Grossman Alex
Matsuyama Toshifumi
Richardson Christopher Donald
Amgen Canada Inc.
McGarry Sean
Odre Steven M.
Oleski Nancy A.
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