Genes differentially expressed in secretory versus...

Chemistry: molecular biology and microbiology – Measuring or testing process involving enzymes or... – Involving nucleic acid

Reexamination Certificate

Rate now

  [ 0.00 ] – not rated yet Voters 0   Comments 0

Details

C536S023100, C536S023500

Reexamination Certificate

active

06884578

ABSTRACT:
The present invention compares expression profiles from matched samples to identify differential gene expression. Samples are matched according to physiological, pharmacological and/or disease state. Comparison of matched samples eliminates gene expression differences that are the result of changes in variables that are not of interest. The gene expression differences that remain can be attributed with a high degree of confidence to the unmatched variation. The gene expression differences thus identified can be used for example to diagnose disease, identify physiological state, design drugs, and monitor therapies.

REFERENCES:
patent: 5143854 (1992-09-01), Pirrung et al.
patent: 5384261 (1995-01-01), Winkler et al.
patent: 5424186 (1995-06-01), Fodo et al.
patent: 5445934 (1995-08-01), Fodor et al.
patent: 5631734 (1997-05-01), Stern et al.
patent: 5677195 (1997-10-01), Winkler et al.
patent: 5708153 (1998-01-01), Dower et al.
patent: 5733729 (1998-03-01), Lipschutz et al.
patent: 5744305 (1998-04-01), Fodor et al.
patent: 5770358 (1998-06-01), Dower et al.
patent: 5770722 (1998-06-01), Lockhart et al.
patent: 5800992 (1998-09-01), Fodor et al.
patent: 5854401 (1998-12-01), Lessey
patent: 5856174 (1999-01-01), Lipschutz et al.
patent: 5874219 (1999-02-01), Rava et al.
patent: 5922591 (1999-07-01), Anderson et al.
patent: 5981956 (1999-11-01), Stern
patent: 6013440 (2000-01-01), Lipschutz et al.
patent: 6020135 (2000-02-01), Levine et al.
patent: 6025601 (2000-02-01), Trulson et al.
patent: 6033850 (2000-03-01), Purvis
patent: 6033860 (2000-03-01), Lockhart et al.
patent: 6040138 (2000-03-01), Lockhart et al.
patent: 6040193 (2000-03-01), Winkler et al.
patent: 6218122 (2001-04-01), Friend et al.
patent: 6440445 (2002-08-01), Nowak et al.
patent: 20020106662 (2002-08-01), Mutter
patent: 20020127555 (2002-09-01), Baban et al.
patent: 9853319 (1998-11-01), None
Srinivasan et al. (Clinical Cancer Research (1999) 5: 2877-2883).*
Abu-Jawdeh et al. (Laboratory Investigation (1999) 79(4): 439-447).*
Florio et al. (Human Reproduction (1998) 13(9): 2606-2611).*
Alizadeh et al., “Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling”,Nature, vol. 403, Feb. 2000, pps. 503-511.
Alon et al., “Broad patterns of gene expression revealed by clustering analysis of tumor and nornal colon tissues probed by oligonucleotide arrays”,Proc. Natl. Acad. Sci. USA, vol. 96, Jun. 1999, pps. 6745-6750.
Chu et al., “The Transcriptional Program of Sporulation in Budding Yeast”,Science, vol. 282, Oct. 1998, pps. 699-705.
Chee et al., “Accessing Genetic Information with High-Density DNA Arrays”,Science, vol. 274, No. 5287, Oct. 25, 1966, pps. 610-614.
Cho et al., “A Genome-Wide Transcriptional Analysis of the Miotic Cell Cycle”,Molecular Cell, vol. 2, Jul. 1998, pps. 65-73.
DeRisi et al., “Exploring the Metabolic and Genetic Control of Gene Expression on a Genomic Scale”,Science, vol. 278, Oct. 24, 1997, pps. 680-686.
Ferea et al., “Observing the living genome”,Current Opinion in Genetics&Developments, 1999, pps. 9:715-722.
Gray et al., “Exploiting Chemical Libraries, Structure and Genomics in the Search for Kinase Inhibitors”,Science, vol. 281, Jul. 24, 1998, pps. 533-538.
Golub et al., “Molecular Classification of Cancer: Class Discovery and Class Predicition by Gene Expression Monitoring”,Science, vol. 286, Oct. 15, 1999, pps. 531-537.
Holstege et al., “Dissecting the Regulatory Circuitry of a Eukaryotic Genome”,Cell, vol. 95, Nov. 25, 1998, pps. 717-728.
Harrington et al., “Monitoring gene expression using DNA microarrays”,Current Opinion in Microbiology, 2000, pps. 3:285-291.
Iyer et al., “The Transcriptional Program in the Response of Human Fibroblasts to Serum”,Science, vol. 283, Jan. 1, 1999, pps. 83-87.
Lee et al., “Gene Expression Profile of Aging and its Retardation by Caloric Restriction”,Science, vol. 285, Aug. 27, 1999, pps. 1390-1393.
Lockhart, “Mutant yeast on drugs”,Natural Medicine, vol. 4, No. 11, Nov. 1998, pps. 1235-1236.
Lockhart et al., “Expression monitoring by hybridization to high-density oligonucleotide arrays”,Nature Biotechnology, vol. 14, Dec. 1996, pps. 1675-1680.
Madhani et al., “Effectors of a development mitogen-activated protein kinase cascade revealed by expression signatures of signaling mutants”,Proc. Natl. Acad. Sci. USA, vol. 96, No. 22, Oct. 26, 1999 pps. 12530-12535.
Perou et al., “Distinctive gene expression patterns in human mammary epithelial cells and breast cancers”,Proc. Natl. Acad. Sci. USA, vol. 96, Aug. 1999, pps. 9212-9217.
Salamonsen et al., “Current concepts of the mechanisms of menstruation”,Bailliered Best Pract Rest Clin Obstet Gyanaecol, Jun. 1999, pps. 13(2): 161-179.
Tabibzadeh et al., “From Endometrail Receptivity to Infertility”,Seminars in Repro Endocrinology, vol. 17, No. 3, 1999, pps. 197-203.
Velculescu et al., “Characterization of the Yeast Transcriptome”,Cell, vol. 88, Jan. 24, 1997, pps. 243-251.
Winzeler et al., “Functional Characterization of the S.cerevisiaeGenome by Gene Deletion and Parallel Analysis”,Science, vol. 285, Aug. 6, 1999, pps. 901-906.
Wodicka et al., “Genome-wide expression monitoring inSaccharomyces cerevisiae”, Nature Biotechnology, vol. 15, Dec. 1997, pps. 1359-1367.
Zhang et al., “Gene Expression Profiles in Normal and Cancer Cells”,Science, vol. 276, May 23, 1997, pps. 1268-1272.
Zhu et al., “Cellular gene expression altered by human cytomegalovirus: Global monitoring with oligonucleotide arrays”,Proc. Natl. Acad. Sci. USA, vol. 95, Nov. 1998, pps. 14470-14475.

LandOfFree

Say what you really think

Search LandOfFree.com for the USA inventors and patents. Rate them and share your experience with other people.

Rating

Genes differentially expressed in secretory versus... does not yet have a rating. At this time, there are no reviews or comments for this patent.

If you have personal experience with Genes differentially expressed in secretory versus..., we encourage you to share that experience with our LandOfFree.com community. Your opinion is very important and Genes differentially expressed in secretory versus... will most certainly appreciate the feedback.

Rate now

     

Profile ID: LFUS-PAI-O-3413571

  Search
All data on this website is collected from public sources. Our data reflects the most accurate information available at the time of publication.