Gene expression profiling of EGFR positive cancer

Chemistry: molecular biology and microbiology – Measuring or testing process involving enzymes or... – Involving nucleic acid

Reexamination Certificate

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C536S023100, C536S024310, C435S287200

Reexamination Certificate

active

08008003

ABSTRACT:
The present invention concerns prognostic markers associated with EGFR positive cancer. In particular, the invention concerns prognostic methods based on the molecular characterization of gene expression in paraffin-embedded, fixed tissue samples of EGFR-expressing cancer, which allow a physician to predict whether a patient is likely to respond well to treatment with an EGFR inhibitor.

REFERENCES:
patent: 4699877 (1987-10-01), Cline et al.
patent: 4968603 (1990-11-01), Slamon et al.
patent: 5015568 (1991-05-01), Tsujimoto et al.
patent: 5202429 (1993-04-01), Tsujimoto et al.
patent: 5459251 (1995-10-01), Tsujimoto et al.
patent: 5474796 (1995-12-01), Brennan
patent: RE35491 (1997-04-01), Cline et al.
patent: 5670325 (1997-09-01), Lapidus et al.
patent: 5741650 (1998-04-01), Lapidus et al.
patent: 5830665 (1998-11-01), Shuber et al.
patent: 5830753 (1998-11-01), Coulie et al.
patent: 5858678 (1999-01-01), Chinnadurai
patent: 5861278 (1999-01-01), Wong et al.
patent: 5928870 (1999-07-01), Lapidus et al.
patent: 5952178 (1999-09-01), Lapidus et al.
patent: 5952179 (1999-09-01), Chinnadurai
patent: 5962312 (1999-10-01), Plowman et al.
patent: 5985553 (1999-11-01), King et al.
patent: 6020137 (2000-02-01), Lapidus et al.
patent: 6100029 (2000-08-01), Lapidus et al.
patent: 6143529 (2000-11-01), Lapidus et al.
patent: 6146828 (2000-11-01), Lapidus et al.
patent: 6171798 (2001-01-01), Levine et al.
patent: 6203993 (2001-03-01), Shuber et al.
patent: 6207401 (2001-03-01), Plowman et al.
patent: 6207452 (2001-03-01), Govindaswamy
patent: 6214558 (2001-04-01), Shuber et al.
patent: 6245523 (2001-06-01), Altieri
patent: 6248535 (2001-06-01), Danenberg et al.
patent: 6251601 (2001-06-01), Bao et al.
patent: 6271002 (2001-08-01), Linsley et al.
patent: 6322986 (2001-11-01), Ross
patent: 6414134 (2002-07-01), Reed
patent: 6582919 (2003-06-01), Danenberg
patent: 6602670 (2003-08-01), Danenberg
patent: 6618679 (2003-09-01), Loehrlein et al.
patent: 6620606 (2003-09-01), Bandman et al.
patent: 6696558 (2004-02-01), Reed et al.
patent: 6716575 (2004-04-01), Plowman et al.
patent: 6750013 (2004-06-01), Gish et al.
patent: 6800737 (2004-10-01), Altieri
patent: 6943150 (2005-09-01), Altieri
patent: 2002/0004491 (2002-01-01), Xu et al.
patent: 2002/0009736 (2002-01-01), Wang
patent: 2002/0039764 (2002-04-01), Rosen
patent: 2002/0160395 (2002-10-01), Altieri et al.
patent: 2002/0194022 (2002-12-01), Comite
patent: 2003/0073112 (2003-04-01), Zhang et al.
patent: 2003/0104499 (2003-06-01), Pressman et al.
patent: 2003/0165952 (2003-09-01), Linnarsson et al.
patent: 2003/0180791 (2003-09-01), Chinnadurai
patent: 2003/0198970 (2003-10-01), Roberts
patent: 2003/0198972 (2003-10-01), Erlander et al.
patent: 2003/0219771 (2003-11-01), Bevilacqua et al.
patent: 2003/0229455 (2003-12-01), Bevilacqua et al.
patent: 2004/0009489 (2004-01-01), Golub et al.
patent: 2004/0126775 (2004-07-01), Altieri et al.
patent: 2004/0133352 (2004-07-01), Bevilacqua et al.
patent: 2009/0298701 (2009-12-01), Baker et al.
patent: 0 108 564 (1988-05-01), None
patent: 1 365 034 (2003-11-01), None
patent: WO 99/02714 (1999-01-01), None
patent: WO 00/50595 (2000-08-01), None
patent: WO 00/55173 (2000-09-01), None
patent: WO012227 (2001-02-01), None
patent: WO 01/25250 (2001-04-01), None
patent: WO 01/40466 (2001-06-01), None
patent: WO 01/55320 (2001-08-01), None
patent: WO 01/70979 (2001-09-01), None
patent: WO 02/00677 (2002-01-01), None
patent: WO 02/06526 (2002-01-01), None
patent: WO 02/08260 (2002-01-01), None
patent: WO 02/08261 (2002-01-01), None
patent: WO 02/08282 (2002-01-01), None
patent: WO 02/08765 (2002-01-01), None
patent: WO 02/44413 (2002-06-01), None
patent: WO 02/46467 (2002-06-01), None
patent: WO0244413 (2002-06-01), None
patent: WO 02/017852 (2002-07-01), None
patent: WO 02/055988 (2002-07-01), None
patent: WO 02/059377 (2002-08-01), None
patent: WO 02/068579 (2002-09-01), None
patent: WO 02/068579 (2002-09-01), None
patent: WO 02/103320 (2002-12-01), None
patent: WO 03/011897 (2003-02-01), None
patent: WO 03/078662 (2003-09-01), None
patent: WO 03/083096 (2003-10-01), None
patent: WO 2004/000094 (2003-12-01), None
Giaccone et al. EGFR inhibitors: what have we learned from the treatment of lung cancer. Nov. 2005 Nature vol. 2, No. 11 pp. 554-561.
Filmus, Jorge. Glypicans in growth control and cancer. 2001. Glycobiology. vol. 11, No. 3, pp. 19R-23R.
Hlubek, Falk et al. Expression of the Invasion Factor LAminin gamma2 in colorectal carcinomas is regulated by beta catenin. Nov. 2001. Cancer Research vol. 61, pp. 8089-8093.
Wu, Thomas. Analysing gene expression data from DNA microarrys to identify candidate genes. 2001. Journal of Pathology. vol. 195 pp. 53-65.
Lucentini, Jack. Gene Association Studies Typically Wrong. 2004. The Scientist. vol. 18 pp. 1-4.
Evans, William et al. Moving towards individualized medicine with pharmacogenomics. 2004. Nature vol. 429, pp. 464-468.
Newton, MA et al. On differentail variablility of expression ratios: improving statistical inference about gene expression changes from microarray data. Journal of Computational Biology 2001. vol. 8, No. 1 pp. 37-52.
Cheung, Vivian et al. Natural variation in human gene expression assessed in lymphoblastoid cells. 2003 Nature Genetics vol. 33 pp. 422-425.
Lee, Wooin et al. Cancer pharmacogenomics: powerful tools in cancer chemotherapy and drug development. The Oncologist 2005. vol. 10 pp. 104-111.
Riese, David et al. Specificity within the EFG family/ErbB receptor family signaling network: BioEssays 1998. vol. 20 pp. 41-48.
Chun, So Young. The significance of CD44 variants expression in colorectal cancer and its regional lymph nodes. 2000. Journal of Korean Medical Science. vol. 15 pp. 696-700.
Salomon, Davide et al. Epidermal growth factor related peptides and their receptors in human malignancies. 1995 Critical Reviews in Oncology/Hematology vol. 19 pp. 183-232.
Notterman, Daniel et al. Transcriptional Gene Expression Profiles of Colorectal Adenoma, Adenocarcinoma, and Normal Tissue Examined by Oligonucleotide Arrays. 2001. Cancer Research vol. 61 pp. 3124-3130.
Lehmann, Ulrich et al. Real Time PCR Analysis of DNA and RNA Extracted from Formalin Fixed and Paraffin Embedded Biopsies. 2001 Methods. vol. 25 pp. 409-418.
Affymetrix array finder at www.affymetrix.com accessed online Jul. 16, 2008.
Airenne, Tomi et al. Differential expression of mouse laminin gamma2 and gamma2* chain transcripts. 2000. Cell Tissue Research. vol. 300 pp. 129-137.
Solmi, Rossella et al. Displayed correlation between gene expression profiled and submicroscopic alterations in response to cetuximab, gefitinib and EGF in human colon cancer cell lines. 2008 BMC Cancer vol. 8 p. 227.
Thisted, Ronald. What is a p value?. 1998 The University of Chicago. http://www.stat.uchicago.edu/˜thisted.
Bhattacharjae, Arindam, et al., Proc. Natl. Acad. Sci. USA, vol. 98, No. 24, 2001, pp. 13790-13795.
Golub, T.R., et al., Science, vol. 286, 1999, pp. 531-537.
Martin, Katherine J., et al., Cancer Research. 60, 2000, pp. 2232-2238.
Ramaswamy, Sridhar, et. al., Proc. Natl. Acad. Sci. USA, 2001, vol. 98, pp. 15149-15154.
Rimm, D.L., et al., Molecular Cloning Reveals Alternative Splice Forms of Human a(E) Catenin, Biochemical and Biophysical Research Communications, 1994, vol. 203, pp. 1691-1699.
Sorlie, Therese, et al., Proc. Natl. Acad. Sci. USA, 2001, vol. 98, No. 19, pp. 10869-10874.
West, Mike, et al., Proc. Natl. Acad. Sci. USA, 2001, vol. 98, No. 20, pp. 11462-11467.
Yan, Pearlly S., et al., Cancer Research, 2001, vol. 61, pp. 8375-8380.
Yeung, Chen-Hsiang, et al., Bioinformatics, vol. 17, Suppl. 1, 2001, pp. S316-S322.
Zhao, Renbin, et al., Analysis of p53-Regulated Gene Expression Patterns Using Oligonucleotide Arrays, Genes & Development, 2000, vol. 14, pp. 981-993.
Arteaga, C.L, Journal of Clinical Oncology, vol. 19:(18), Suppl. (2001).
Bishop, P.C. et al., Oncogene, 21: 119-127 (2002).
Busse, D. et al., The Journal of Biological Chemistry, 275:(10) 6987-6995 (2000).
Specht, K. et al., American Journal of Phathology, 158:2 (2001).
Brabender, Jan, et al.;Epidermal Grow

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