Gene database retrieval system where a key sequence is compared

Details Gene database retrieval system where a key sequence is compared Gene database retrieval system where a key sequence is compared

1994-09-26

1998-01-06

Black, Thomas G.

Boots, shoes, and leggings

3644131, 364497, 435 6, 935 77, 395800, G06F 1730, G06F 1312

Patent

active

057064989

ABSTRACT:
The gene database retrieval system, for making a retrieval for a gene sequence having a sequence similar to a sequence data from a gene database, contains a gene database for storing the sequence data of genes whose structures or sequences have already been analyzed and identified, a dynamic programming operation unit for determining the degree of similarity between target data and key data by utilizing the sequence data of the bases of the gene from the gene database as the target data and the sequence data of the bases as the key for retrieval, and a central processing device unit for executing the access process to make access to the gene database, in parallel to the operation process for determining the degree of similarity by transmitting the sequence data of the bases from the gene database continually one after another into the dynamic programming operation unit as the target data, by controlling the gene database and the dynamic programming operation unit.

REFERENCES:
patent: 4939666 (1990-07-01), Hardman
patent: 5526463 (1996-06-01), Gillick et al.
patent: 5534438 (1996-07-01), Haydon et al.
patent: 5577249 (1996-11-01), Califano
patent: 5595877 (1997-01-01), Gold et al.
A.F.W. Coulson et al, "Protein and Nucleic Acid Sequence Database Searching: A Suitable Case for Parallel Processing", The Computer Journal, vol. 30, No. 5, 1987, pp. 420-424.
D.T. Hoang, "Searching Genetic Databases on Splash 2", FPGAs For Custom Computing Machines, Apr. 5-7, 1993, pp. 185-191.
E. Lander, "Protein Sequence Comparison on a Data Parallel Computer", 1988 International Conference On Parallel Processing, Aug. 15-19, 1988, pp. 257-263.
T. Barsalou, M.D. et al, "Searching Gene and Protein Sequence Databases", M.D. Computing, vol. 8, No. 3, 1991, pp. 144-149.
Megson, G. M., "Efficient Systolic String Matching", Electronic Letters, vol. 26, No. 24, pp. 2040-2042, Nov. 1990.
Cohen, R., "Resurchers Inherit DNA-analysis Database", MacWEEK, vol. 6, No. 11, p. 8, Mar. 1992.
Bunke, H., "Edit Distanceof Run-Lenght Coded Strings", Applied Computing: Technological Challenges of the 1990's vol. 1, pp. 137-143, Mar. 1992.
Khan, A. S., "Single pass sequencingand the physical and genetic mapping of human brain cDNAs", nature genetics, vol. 2, pp. 180-185, Nov. 1992.
Arnold J. M. et al., "The Splash 2 Processor and Applications", Computer Design ICCD '93, pp. 482-485, Oct. 1993.

Affiliated with

Also associated with

Rating

Gene database retrieval system where a key sequence is compared does not yet have a rating. At this time, there are no reviews or comments for this patent.

If you have personal experience with Gene database retrieval system where a key sequence is compared , we encourage you to share that experience with our LandOfFree.com community. Your opinion is very important and Gene database retrieval system where a key sequence is compared will most certainly appreciate the feedback.

Rate now

Comments { 0 }

Profile ID: LFUS-PAI-O-2338029