Exhaustive selection of RNA aptamers against complex targets

Chemistry: molecular biology and microbiology – Measuring or testing process involving enzymes or... – Involving nucleic acid

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C435S091200

Reexamination Certificate

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07435542

ABSTRACT:
A method of identifying RNA ligands which bind to a target molecule by treating a first pool of RNA ligands that collectively bind more than one target under conditions effective to reduce the concentration or eliminate the presence of one or more predominate target-binding RNA ligands from the first pool of RNA ligands; amplifying the RNA ligands in the treated first pool, thereby forming a second pool of RNA ligands that is enriched in one or more non-predominate target-binding RNA ligands of the first pool but not the one or more predominate target-binding RNA ligands thereof; and identifying one or more predominate target-binding RNA ligands that are present in the second pool at a higher concentration than other target-binding RNA ligands. Oligonucleotides and kits which can be used in practicing the present invention are also disclosed, as are aptamers that bind to a heat shock factor protein and their use.

REFERENCES:
patent: 4971902 (1990-11-01), Nepom
patent: 5270163 (1993-12-01), Gold et al.
patent: 5473060 (1995-12-01), Gryaznov et al.
patent: 5571903 (1996-11-01), Gryaznov
patent: 5582981 (1996-12-01), Toole et al.
patent: 5593835 (1997-01-01), Rando et al.
patent: 5594121 (1997-01-01), Froehler et al.
patent: 5614503 (1997-03-01), Chaudhary et al.
patent: 5631146 (1997-05-01), Szostak et al.
patent: 5639595 (1997-06-01), Mirabelli et al.
patent: 5643890 (1997-07-01), Iversen et al.
patent: 5645985 (1997-07-01), Froehler et al.
patent: 5656739 (1997-08-01), Cubicciotti
patent: 5658738 (1997-08-01), Nadeau et al.
patent: 5681702 (1997-10-01), Collins et al.
patent: 5683987 (1997-11-01), Smith
patent: 5688670 (1997-11-01), Szostak et al.
patent: 5712127 (1998-01-01), Malek et al.
patent: 5756291 (1998-05-01), Griffin et al.
patent: 5792613 (1998-08-01), Schmidt et al.
patent: 5840867 (1998-11-01), Toole et al.
patent: 5861501 (1999-01-01), Benseler et al.
patent: 6010884 (2000-01-01), Griffiths
patent: 6344321 (2002-02-01), Rabin et al.
patent: 6544741 (2003-04-01), Mugasimangalam
patent: 0 710 668 (1996-05-01), None
patent: 0 775 745 (1997-05-01), None
patent: 0 784 984 (1997-07-01), None
patent: WO 94/06811 (1994-03-01), None
patent: WO 95/11910 (1995-05-01), None
patent: WO 96/40159 (1996-12-01), None
patent: WO 97/20031 (1997-06-01), None
Murate et al., “Up-Regulation of Acid Sphingomyelinase During Retinoic Acid-Induced Myeloid Differentiation of NB4, a Human Acute Promyelocytic Leukemia Cell Line,”Journal of Biological Chemistry277(12):9936-9943 (2002).
Ellington, A.D., “RNA Selection. Aptamers Achieve the Desired Recognition,”Curr. Biol. 4(5):427-429 (1994).
Yamamoto et al., “In vitro Selection of RNA Aptamers That Can Bind Specifically to Tat Protein of HIV-1,”Nucleic Acids Symp. Ser. 34:145-146 (1995).
Tian et al., “Dissecting Protein:Protein Interactions Between Transcription Factors With an RNA Aptamer,”RNA1(3):317-326 (1995).
Burgstaller et al., “Structural Probing and Damage Selection of Citrulline- and Arginine-specific RNA Aptamers Identify Base Proteins for Binding,”Nucleic Acids Res. 23(23):4769-4776 (1995).
Symensma et al., “RNA Aptamers Selected to Bind Human Immunodeficiency Virus Type 1 Rev in vitro are Rev Responsive in vivo,”J. Virol. 70(1):179-187 (1996).
Conrad et al., “In vitro Selection of Nucleic Acid Aptamers That Bind Proteins,”Methods Enzymol. 267:336-337 (1996).
Hale et al., “Protein Synthesis Editing by a DNA Aptamer,”Proc. Natl. Acad. Sci. USA93(7):2755-2758 (1996).
Ye et al., “Deep Penetration of an Alpha-helix into a Widened RNA Major Groove in the HIV-1 Rev Peptide-RNA Aptamer Complex,”Nat. Struct. Biol. 3(12):1026-1033 (1996).
Li et al., “RNA Aptamers for Yeast Ribosomal Protein L32 Have a Conserved Purine-rich Internal Loop,”RNA3(3):245-254 (1997).
Moine et al., “The RNA Binding Site of S8 Ribosomal Protein ofEscherichia coli:Selex and Hydroxyl Radical Probing Studies,”RNA3(3):255-268 (1997).
Eaton et al., “Post-SELEX Combinatorial Optimization of Aptamers,”Bioorg. Med. Chem, 5(6):1087-1096 (1997).
Gilbert et al., “RNA Aptamers That Specifically Bind to a K Ras-derived Farnesylated Peptide,”Bioorg. Med. Chem. 5(6):1115-1122 (1997).
Marshall et al., “A Biopolymer by Any Other Name Would Bind as Well: A Comparison of the Ligand-binding Pockets Of Nucleic Acids and Proteins,”Structure5(6):729-734 (1997).
Klug et al., “In vitro and in vivo Cha racterization of Novel mRNA Motifs That Bind Special Elongation Factor SelB,”Proc. Natl. Acad. Sci. USA94(13):6676-6681 (1997).
Urvil et al., “Selection of RNA Aptamers That Bind Specifically to the NS3 Protease of Hepatitis C Virus,”Eur. J. Biochem. 248(1):130-138 (1997).
Kumar et al., “Isolation of RNA Aptamers Specific to the NS3 Protein of Hepatitis C Virus From a Pool of Completely Random RNA,”Virology237(2):270-282 (1997).
Weiss et al., “RNA Aptamers Specifically Interact With the Prion Protein PrP,”J. Virol. 71(11):8790-8797 (1997).
Shi et al., “Artificial Genes Expressing RNA Aptamers as Specific Protein Inhibitors in vivo,”Nucleic Acids Symposium Series36:194-196 (1997).
Shi et al., “A Specific RNA Hairpin Loop Structure Binds the RNA Recognition Motifs of theDrosophilaSR Protein B52,”Mol. Cell. Biol. 17(5):2649-2657 (1997).
Shi, “Perturbing Protein Function with RNA Aptamers,” Thesis, Cornell University, University of Microfilms, Inc. (1997).
Chen et al., “Multitarget-Ribozyme Directed to Cleave at Up to Nine Highly Conserved HIV-1 env RNA Regions Inhibits HIV-1 Replication-Potential Effectiveness Against Most Presently Sequenced HIV-1 Isolates,”Nucl. Acids Res. 20(17):4581-4589 (1992).
Shi et al., “Evolutionary Dynamics and Population Control During In Vitro Selection and Amplification With Multiple Targets,”RNA8:1461-1470 (2002).

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