Evolving new molecular function

Combinatorial chemistry technology: method – library – apparatus – Method of creating a library

Reexamination Certificate

Rate now

  [ 0.00 ] – not rated yet Voters 0   Comments 0

Details

C506S004000, C506S007000, C506S013000, C506S028000, C435S091200, C536S023100

Reexamination Certificate

active

07998904

ABSTRACT:
Nature evolves biological molecules such as proteins through iterated rounds of diversification, selection, and amplification. The present invention provides methods, compositions, and systems for synthesizing, selecting, amplifying, and evolving non-natural molecules based on nucleic acid templates. The sequence of a nucleic acid template is used to direct the synthesis of non-natural molecules such as unnatural polymers and small molecules. Using this method combinatorial libraries of these molecules can be prepared and screened. Upon selection of a molecule, its encoding nucleic acid template may be amplified and/or evolved to yield the same molecule or related molecules for re-screening. The inventive methods and compositions of the present invention allow for the amplification and evolution of non-natural molecules in a manner analogous to the amplification of natural biopolymer such as polynucleotides and protein.

REFERENCES:
patent: 4683202 (1987-07-01), Mullis
patent: 4703034 (1987-10-01), Freidinger et al.
patent: 4863857 (1989-09-01), Blalock et al.
patent: 5162218 (1992-11-01), Schultz
patent: 5270170 (1993-12-01), Schatz et al.
patent: 5449602 (1995-09-01), Royer et al.
patent: 5539082 (1996-07-01), Nielsen et al.
patent: 5547835 (1996-08-01), Koster
patent: 5559000 (1996-09-01), Janda et al.
patent: 5573905 (1996-11-01), Lerner et al.
patent: 5574141 (1996-11-01), Seliger et al.
patent: 5597697 (1997-01-01), Diamond
patent: 5605798 (1997-02-01), Koster
patent: 5622824 (1997-04-01), Koster
patent: 5637682 (1997-06-01), Nieuwlandt et al.
patent: 5639603 (1997-06-01), Dower et al.
patent: 5660988 (1997-08-01), Duck et al.
patent: 5677195 (1997-10-01), Winkler et al.
patent: 5691141 (1997-11-01), Koster
patent: 5698685 (1997-12-01), Summerton et al.
patent: 5708153 (1998-01-01), Dower et al.
patent: 5719262 (1998-02-01), Buchardt et al.
patent: 5721099 (1998-02-01), Still et al.
patent: 5723289 (1998-03-01), Eaton et al.
patent: 5723598 (1998-03-01), Lerner et al.
patent: 5770358 (1998-06-01), Dower et al.
patent: 5770367 (1998-06-01), Southern et al.
patent: 5786461 (1998-07-01), Buchardt et al.
patent: 5789160 (1998-08-01), Eaton et al.
patent: 5789162 (1998-08-01), Dower et al.
patent: 5789172 (1998-08-01), Still et al.
patent: 5811238 (1998-09-01), Stemmer et al.
patent: 5840485 (1998-11-01), Lebl et al.
patent: 5843701 (1998-12-01), Gold et al.
patent: 5846839 (1998-12-01), Gallop et al.
patent: 5851765 (1998-12-01), Koster
patent: 5858660 (1999-01-01), Eaton et al.
patent: 5872003 (1999-02-01), Koster
patent: 5888971 (1999-03-01), Greco et al.
patent: 5922545 (1999-07-01), Mattheakis et al.
patent: 5925517 (1999-07-01), Tyagi et al.
patent: 5945325 (1999-08-01), Arnold et al.
patent: 5958691 (1999-09-01), Pieken et al.
patent: 5958703 (1999-09-01), Dower et al.
patent: 5986053 (1999-11-01), Ecker et al.
patent: 5998140 (1999-12-01), Dervan et al.
patent: 6034056 (2000-03-01), Dutta
patent: 6037120 (2000-03-01), Benner
patent: 6043031 (2000-03-01), Koster et al.
patent: 6048698 (2000-04-01), Eaton et al.
patent: 6060596 (2000-05-01), Lerner et al.
patent: 6074823 (2000-06-01), Koster
patent: 6080826 (2000-06-01), Grubbs et al.
patent: 6103476 (2000-08-01), Tyagi et al.
patent: 6127154 (2000-10-01), Mosbach et al.
patent: 6140053 (2000-10-01), Koster
patent: 6140493 (2000-10-01), Dower et al.
patent: 6140496 (2000-10-01), Benner
patent: 6143497 (2000-11-01), Dower et al.
patent: 6150097 (2000-11-01), Tyagi et al.
patent: 6165717 (2000-12-01), Dower et al.
patent: 6175001 (2001-01-01), Barbas et al.
patent: 6194144 (2001-02-01), Koster
patent: 6194550 (2001-02-01), Gold et al.
patent: 6207446 (2001-03-01), Szostak et al.
patent: 6214553 (2001-04-01), Szostak et al.
patent: 6225450 (2001-05-01), Koster
patent: 6238871 (2001-05-01), Koster
patent: 6287765 (2001-09-01), Cubicciotti
patent: 6291160 (2001-09-01), Lerner et al.
patent: 6291161 (2001-09-01), Lerner et al.
patent: 6368874 (2002-04-01), Gallop et al.
patent: 6391593 (2002-05-01), Weston et al.
patent: 6436635 (2002-08-01), Fu et al.
patent: 6511809 (2003-01-01), Baez et al.
patent: 6607878 (2003-08-01), Sorge
patent: 6680192 (2004-01-01), Lerner et al.
patent: 7070928 (2006-07-01), Liu et al.
patent: 7223545 (2007-05-01), Liu et al.
patent: 2001/0036638 (2001-11-01), Nolan et al.
patent: 2002/0034757 (2002-03-01), Cubicciotti
patent: 2002/0038000 (2002-03-01), Gold et al.
patent: 2002/0064779 (2002-05-01), Landegren et al.
patent: 2002/0064798 (2002-05-01), Nolan et al.
patent: 2003/0099945 (2003-05-01), Eaton et al.
patent: 2003/0104389 (2003-06-01), Sergeev
patent: 2003/0113738 (2003-06-01), Liu et al.
patent: 2003/0143561 (2003-07-01), Pedersen et al.
patent: 2004/0014090 (2004-01-01), Neri et al.
patent: 2004/0049008 (2004-03-01), Pedersen et al.
patent: 2004/0180412 (2004-09-01), Liu et al.
patent: 2005/0025766 (2005-02-01), Liu et al.
patent: 2005/0042669 (2005-02-01), Liu et al.
patent: 2005/0142583 (2005-06-01), Liu et al.
patent: 2005/0170376 (2005-08-01), Liu et al.
patent: 2005/0221316 (2005-10-01), Pedersen et al.
patent: 2005/0227281 (2005-10-01), Liu et al.
patent: 2005/0281819 (2005-12-01), Liu et al.
patent: 2006/0223086 (2006-10-01), Liu et al.
patent: 2008/0318807 (2008-12-01), Liu et al.
patent: 2009/0035824 (2009-02-01), Liu et al.
patent: 2009/0149347 (2009-06-01), Liu et al.
patent: 196 46 372 (1997-06-01), None
patent: 0 324 616 (1989-07-01), None
patent: 0 604 552 (1993-08-01), None
patent: 0 643 778 (1995-03-01), None
patent: 0 773 227 (1997-05-01), None
patent: WO-91/05058 (1991-04-01), None
patent: WO-92/02536 (1992-02-01), None
patent: WO-93/06121 (1993-04-01), None
patent: WO-93/20242 (1993-10-01), None
patent: WO-96/09316 (1996-03-01), None
patent: WO-00/23458 (2000-04-01), None
patent: WO-00/32823 (2000-06-01), None
patent: WO-00/47775 (2000-08-01), None
patent: WO-00/61775 (2000-10-01), None
patent: WO-01/16352 (2001-03-01), None
patent: WO-02/074929 (2002-09-01), None
patent: WO-02/102820 (2002-12-01), None
patent: WO-02/103008 (2002-12-01), None
patent: WO-03/031591 (2003-04-01), None
patent: WO-03/078050 (2003-09-01), None
patent: WO-03/078445 (2003-09-01), None
patent: WO-03/078446 (2003-09-01), None
patent: WO-03/078625 (2003-09-01), None
patent: WO-03/078626 (2003-09-01), None
patent: WO-03/078627 (2003-09-01), None
patent: WO-03/082901 (2003-10-01), None
patent: WO-04/001042 (2003-12-01), None
patent: WO-2004/013070 (2004-02-01), None
patent: WO-2004/016767 (2004-02-01), None
patent: WO-2004/024929 (2004-03-01), None
patent: WO-2004/039825 (2004-05-01), None
patent: WO-2004/056994 (2004-07-01), None
patent: WO-2004/074429 (2004-09-01), None
patent: WO-2004/074501 (2004-09-01), None
patent: WO-2004/083427 (2004-09-01), None
patent: WO-2004/110964 (2004-12-01), None
patent: WO-2005/003778 (2005-01-01), None
patent: WO-2006/130669 (2006-12-01), None
patent: WO-2006/133312 (2006-12-01), None
patent: WO-2006/135654 (2006-12-01), None
patent: WO-2006/138560 (2006-12-01), None
patent: WO-2006/138666 (2006-12-01), None
patent: WO-2007/016488 (2007-02-01), None
patent: WO-2008/036273 (2008-03-01), None
patent: WO-2008/054600 (2008-05-01), None
Brenner et al. Encoded combinatorial chemistry. Proc Natl Acad Sci U S A. Jun. 15, 1992;89(12):5381-3.
Stryer (1995) Biochemistry, 4th Edition, Chapter 37.
Rohatgi et al. (1996) J. Am. Chem. Soc. 118: 3332-39.
Rohatgi et al. (1996) J. Am. Chem. Soc. 118: 3340-44.
Suga et al. (1998)J. Am. Chem. Soc. 120: 1151-1156.
Suga et al. (1998) Biochem. 37: 10118-25.
Lee et al. (2000) Nature Struct. Biol. 7: 28-33.
Bartel et al. (1993) Science 261 1411-18.
Xu et al. (1999) Nucl. Acids Res. 27: 875-81.
Ekland et al. (1995) Science 269: 364-70.
Jenne et al. (1998) Chem. Biol. 5: 23-34.
Goodwin et al. (1992) J. Am. Chem. Soc. 114: 9197-98.
Xu et al. (1998) Nucl. Acids Res. 26(13): 3159-64.
Homepage of David R. Liu (http://evolve.harvard.edu) available at Mar. 11, 2000 according to the Wayback Machine (http://web.archive.org).
Homepage of David R. Liu (http://evolve.harvard.edu) available at Oct. 15, 2000 according to the Wayback Machine (http://web.arc

LandOfFree

Say what you really think

Search LandOfFree.com for the USA inventors and patents. Rate them and share your experience with other people.

Rating

Evolving new molecular function does not yet have a rating. At this time, there are no reviews or comments for this patent.

If you have personal experience with Evolving new molecular function, we encourage you to share that experience with our LandOfFree.com community. Your opinion is very important and Evolving new molecular function will most certainly appreciate the feedback.

Rate now

     

Profile ID: LFUS-PAI-O-2652063

  Search
All data on this website is collected from public sources. Our data reflects the most accurate information available at the time of publication.