Enzyme-mediated synthesis of peptidomimetics

Details Enzyme-mediated synthesis of peptidomimetics Enzyme-mediated synthesis of peptidomimetics

1999-10-22

2002-08-20

Saucier, Sandra E. (Department: 1651)

Chemistry: molecular biology and microbiology

Process of utilizing an enzyme or micro-organism to destroy...

Resolution of optical isomers or purification of organic...

C435S128000, C435S129000

Reexamination Certificate

active

06436697

ABSTRACT:

FIELD OF THE INVENTION
This invention relates to the synthesis of peptidomimetics via enzyme-mediated coupling.
BACKGROUND OF THE INVENTION
Peptidomimetics, and particularly &agr;-thiopeptidomimetics, have been shown to inhibit many enzymes, including matrix metalloproteinases, which are implicated in a broad range of inflammatory diseases such as rheumatoid and osteoarthritis, also bone degradation in osteoporosis and congestive heart failure, e.g. as described in WO 96/11209, WO 96/35714 and WO 97/03783. This family of enzymes is also implicated in at least three aspects of cancer, metastasis, invasive growth and angiogenesis. Peptidomimetics constructed from single enantiomer constituents may offer the greatest potential to effect selective inhibition of matrix metalloproteinases and thereby achieve useful therapeutic benefit.
Peptidomimetic compounds can be accessed by conventional formation of amide linkages using standard coupling reagents such as 1-(3-dimethylaminopropyl)-3-ethylcarbodiimide hydrochloride (J. C. Sheehan et al.,
J. Org. Chem.,
1961, 26, 2525-2528) or mixed anhydrides, but such methods with these coupling reagents are expensive, and activated intermediates may be susceptible to racemisation, resulting in a diastereomeric mixture of products. An alternative methodology is to use an enzyme, which avoids racemisation; furthermore, if one of the components in the reaction is racemic or in an optically enriched, but not optically pure, state, then the stereospecificity of the enzyme can be exploited to effect both coupling and resolution of that component in a single step. If such an enzyme possesses good stability, and is available in immobilised form, then enzymic peptide bond formation becomes economically attractive since the enzyme can be recovered and reused.
WO 92/02617 discloses that enzymes can be crystallised and cross-linked in situ, e.g. with glutaraldehyde, to give highly insoluble derivatives. Such enzymes, known as CLECs, are high performance regio- and stereoselective catalysts, some of which are suitable for peptide bond formation. They possess increased stability relative to the native enzyme, especially at elevated temperatures and in the presence of high concentrations of polar organic solvents, conditions under which the native enzymes are not active. Organic solvent mixtures are useful for enzymic peptide synthesis, since they can be designed to allow maximum solubility of substrates but have low solubility for the product, which may precipitate during the biotransformation driving the reaction to completion.
The synthesis of a number of peptides containing both natural and unnatural &agr;-amino acids has been described using both enzymes and more specifically CLEC's such as PeptiCLEC-TR. See Zelinski and Waldmann, Angew. Chem. Int. Ed. Engl. 36:722-4 (1997), Persichetti et al, J. Am. Chem. Soc. 117:2732-7 (1995).
U.S. Pat. No. 5,728,876 discloses the resolution of amines by enzyme-catalysed acylation.
Yi-Fong et al, J. Org. Chem. 62(11):3488-95 (1997), discloses cross-linked crystals of subtilisin as a versatile catalyst for organic synthesis.
Moree et al, JACS 119(17):3942-7 (1997), discloses subtilisin BPN as a catalyst for the synthesis of certain peptides.
U.S. Pat. No. 3,897,480 discloses, as intermediates in the preparation of N-(mercaptoacetyl) aminoacids, benzoyl-protected forms thereof.
SUMMARY OF THE INVENTION
This invention is based on the surprising discovery that enzyme-catalysed coupling of compounds of formulae (2) and (3) provides compounds of formula (1) with high efficiency.
According to the invention, a process for obtaining peptide-like compounds, or precursors to such compounds, comprises the biotransformation of an optically pure or racemic &agr;-substituted carboxylic acid derivative of formula (2) with an optically pure or racemic amino acid derivative (3), or an analogue, having a free amine group. Such reaction forms the amide bond and a new peptidomimetic product. It is noteworthy that, if the &agr; position in (2) is either unsubstituted, or for example is substituted with bromine, no coupling is observed.
In a preferred embodiment of the present invention, the enzyme in this process is thermolysin, and whilst the free enzyme can be used in solution to effect a single coupling reaction, the cross-linked enzyme crystalline form shows much greater stability allowing its recovery and reuse. Simple separation of the product (1) is also facilitated.
A significant advantage of this method is that both or one of the substrates may be optically pure, racemic, or optically active. In the case where a racemic component is utilised in the coupling, the unreacted isomer may subsequently be racemised and reutilised in the coupling reaction.
In the given formulae, A is a thiol-protecting group, B, C and D are each the same or different organic groups of up to 30 C atoms, optionally functionalised at any position, provided that neither a primary amine nor a primary amide functionality is present, and X is a group that can be displaced by NH
2
. It is particularly preferred that A is aroyl, e.g. benzoyl, owing to the stability of the protecting group during the biotransformation; certain compounds of formulae (1) and (2), wherein A is aroyl, are novel and represent a further aspect of this invention.
DESCRIPTION OF THE INVENTION
Compounds of formula (2) have a free functional group X, e.g. where COX comprises a carboxyl group, and is substituted at the &agr; position with sulfur. This thiol group in the &agr; position is preferentially protected. Suitable protecting groups are acyl and aroyl groups of up to 20 C atoms. Specific examples are acetyl, benzoyl or benzyloxycarbonyl. Additionally the side-chain may be protected as either a homo or hetero-disulfide, where the former example is the most atom-efficient protecting group. Enzyme-catalysed couplings of this nature with a free thiol group at this, or adjacent positions, generally are very inefficient due to the inactivation of the enzyme. The group B, at the &agr; position, can be variable, and is limited only by the intrinsic enzyme specificity.
Compounds of formula (3) have a free amine group. They may also have a carboxyl at the &agr; position which is protected, for example as a methylamide or in the form of a dipeptide where the second amino acid terminates with a protected carboxyl group, for example as the methylamide. The functionality C, &agr; to the free amine, can vary and can be either structurally similar to or the same as the natural specificity for the enzyme.
Various enzymes may be used. Examples include thermolysin (in which case X is preferably OH) or subtilisin (in which case X may be OR
1
, R
1
being any esterifying group such as a hydrocarbon group of up to 30 C atoms, e.g. C
1-6
alkyl). The enzyme is preferably provided as a CLEC.
As indicated above, the nature of each of B, C and D is not especially limited, except perhaps by enzyme specificity. This will be understood by, and can be handled by appropriate measures known to, one skilled in the art. Each may be, for example, aliphatic such as alkyl or aryl such as phenyl or naphthyl, optionally substituted by one or more functional or non-functional groups.
In a typical biotransformation, the acid and amine substrates (2) and (3) are dissolved in a solvent mixture, such as 40% ethanol in water containing 10 mM calcium acetate, and then the enzyme is added to start the reaction. The heterogeneous mixture is stirred at 40-50° C., and as the product is formed it precipitates. Alternatively, a biphasic system of ethyl acetate and either water or 10 mM calcium acetate in water can be used. Surprisingly, it has been found that high substrate concentrations, of >100 g/l, were well tolerated. Upon completion of the reaction, as judged by HPLC, the enzyme can then be recovered by filtration, and found to retain much of its activity for use in subsequent cycles.
This reaction may leave a crude product solution. If the substrates are optically pure, then the product may be precipitated and recover

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