Electrochemical method to measure DNA attachment to an...

Chemistry: molecular biology and microbiology – Measuring or testing process involving enzymes or... – Involving nucleic acid

Reexamination Certificate

Rate now

  [ 0.00 ] – not rated yet Voters 0   Comments 0

Details

C435S091100, C435S091200, C536S023100, C536S024300, C536S026500

Reexamination Certificate

active

10429291

ABSTRACT:
The present disclosure provides methods and compositions for conducting an assay to detect nucleic acid hybridization in the presence of oxygen. In particular, ruthenium complexes having a reduction potential that does not coincide with the reduction potential of molecular oxygen are disclosed and amperometric techniques for their use are described. In preferred embodiments, the ruthenium complex is ruthenium (III) pentaamine pyridine and the nucleic acid hybridization event that is detected is DNA hybridization. Further, techniques for enhancing detectable contrast between hybridized and unhybridized nucleic acids are disclosed. In particular, the use of elongated target strands as well as the use of uncharged probe strands are discussed.

REFERENCES:
patent: 4469863 (1984-09-01), Ts'o et al.
patent: 4840893 (1989-06-01), Hill et al.
patent: 6180346 (2001-01-01), Thorp et al.
patent: 2001/0021534 (2001-09-01), Wohlstadter et al.
patent: 2003/0152960 (2003-08-01), Thorp et al.
patent: 2004/0152097 (2004-08-01), Takenaka
Uhlmann et al. Chemical Reviews vol. 90, No. 4 Jun. 1990 pp. 543-583.
van Boom, et al., “Synthesis of oligonucleotides with sequences identical with or analogous to the 3′-end of 16S ribosomal RNA ofEscherichia coli: preparation of m-6-2-A-C-C-U-C-C and A-C-C-U-C-m-4-2C via phosphotriester intermediates,” Nucleic Acids Research, vol. 4, No. 3, pp. 747-759, (Mar. 1997).
Disney et al., “Targeting aPneumocystis cariniigroup I intron with methylphosphonate oligonucleotides: backbone charge is not required for binding or reactivity,” Biochemistry, vol. 39, No. 23, pp. 6991-7000, (May 17, 2000).
Finklea, “Self-assembled monolayers on electrodes”, Encyclopedia of Analytical Chemistry, John Wiley & Sons, Ltd., (2000).
Finklea, et al., “Electron-transfer kinetics in organized thiol monolayers with attached pentaammine(pyridine) ruthenium redox centers”, J. Am. Chem. Soc., vol. 114, No. 9, pp. 3173-3181, (1992).
Ferguson, et al., “Application of free-energy decomposition to determine the relative stability of R and S oligodeoxyribonucleotide methylphosphonates,” Antisense Research and Development, vol. 1, pp. 243-254, (1991).
Hardwidge, et al., “Charge neutralization and DNA bending by theEscherichia colicatabolite activator protein,” Nucleic Acids Research, vol. 30, No. 9, pp. 1879-1885, (2002).
Kibler-Herzog, et al., “Duplex stabilities of phosphorothioate, methylphosphonate, and RNA analogs of two DNA 14-mers,” Nucleic Acids Research, vol. 19, No. 11, pp. 2979-2986, (May 1, 1991).
Le Bec, et al., “Stereospecific Grignard-Activated Solid Phase Synthesis of DNA Methylphosphonate Dimers,” J. Org. Chem., vol. 61, pp. 510-513, (1996).
Lin, et al., “Use of EDTA derivatization to characterize interactions between oligodeoxyribonucleoside methylphophonates and nucleic acids,” vol. 28, pp. 1054-1061, (1989).
Marcus-Sekura et al., “Comparative inhibition of chloramphenicol acetyltransferase gene expression by antisense oligonucleotide analogues having alkyl phosphotriester, methylphosphonate and phosphorothioate linkages,” Nucleic Acids Research, vol. 15, No. 14, pp. 5749-5763, (1987).
Nielsen, “DNA analogues with nonphosphodiester backbones”, Annu. Rev. Biophys. Biomol. Struct., vol. 24, pp. 167-183, (1995).
Okonogi, et al., “Phosphate backbone neutralization increases duplex DNA flexibility: A model for protein binding,” PNAS U.S.A, vol. 99, No. 7, pp. 4156-4160, (Apr. 2, 2002).
Ray, et al., “Peptide nucleic acid (PNA): its medical and biotechnical applications and promise for the future”, FASEB Journal, vol. 14, pp. 1041-1060, (Jun. 2000).
Reynolds, et al., “Synthesis and thermodynamics of oligonucleotides containing chirally pure Rρ methylphosphonate linkages,” Nucleic Acids Research, vol. 24, No. 22, pp. 4584-4591, (1996).
Steel, et al., “Electrochemical quantitation of DNA immobilized on Gold”, Anal. Chem., vol. 70, No. 22, pp. 4670-4677, (Nov. 15, 1998).
Sung, et al., “Synthesis of the human insulin gene. Part II. Further improvements in the modified phosphotriester method and the synthesis of seventeen deoxyribooligonucleotide fragments constituting human insulin chains B and mini-CDNA,” Nucleic Acids Research, vol. 7, No. 8, pp. 2199-2212, (1979).
Thiviyanathan, et al., “Structure of hybrid backbone methylphosphate DNA heteroduplexes: effect of R and S stereochemistry,” Biochemistry, vol. 41, pp. 827-838, (2002).
Vyazovkina, et al., “Synthesis of specific diastereomers of a DNA methylphosphonate heptamer, d(CpCpApApApCpA), and stability of base pairing with the normal DNA octamer d(TPGPTPTPTPGPGPC),” Nucleic Acids Research, vol. 22, No. 12, pp. 2404-2409.
International Search Report and Written Opinion mailed on May 17, 2005.
STRATAGENE Catalog. Gene Characterization Kits, 1988, p. 39.
Supplementary European Search Report, Application No. EP 04 75 1075, in two pages.

LandOfFree

Say what you really think

Search LandOfFree.com for the USA inventors and patents. Rate them and share your experience with other people.

Rating

Electrochemical method to measure DNA attachment to an... does not yet have a rating. At this time, there are no reviews or comments for this patent.

If you have personal experience with Electrochemical method to measure DNA attachment to an..., we encourage you to share that experience with our LandOfFree.com community. Your opinion is very important and Electrochemical method to measure DNA attachment to an... will most certainly appreciate the feedback.

Rate now

     

Profile ID: LFUS-PAI-O-3839649

  Search
All data on this website is collected from public sources. Our data reflects the most accurate information available at the time of publication.