Chemistry: molecular biology and microbiology – Measuring or testing process involving enzymes or... – Involving nucleic acid
Patent
1992-04-16
1995-04-25
Zitomer, Stephanie W.
Chemistry: molecular biology and microbiology
Measuring or testing process involving enzymes or...
Involving nucleic acid
435 911, 935 77, 935 78, C12Q 168, C12P 1934
Patent
active
054098114
ABSTRACT:
A method for sequencing a strand of DNA, including the steps off: providing the strand of DNA; annealing the strand with a primer able to hybridize to the strand to give an annealed mixture; incubating the mixture with four deoxyribonucleoside triphosphates, a DNA polymerase, and at least three deoxyribonucleoside triphosphates in different amounts, under conditions in favoring primer extension to form nucleic acid fragments complementory to the DNA to be sequenced; labelling the nucleic and fragments; separating them and determining the position of the deoxyribonucleoside triphosphates by differences in the intensity of the labels, thereby to determine the DNA sequence.
REFERENCES:
Tabor et al., "DNA Sequence Analysis with Modified Bacteriophage T7 DNA Polymerase", Proc. Natl. Acad. Sci., USA 84:4767 (1987).
Unites States Biochemical Corporation Booklet, "Sequenase" (1987).
United States Biochemical Corporation, Editorial Comments, vol. 14, No. 2 (1987).
Ollis et al., "Structure of Large Fragment of E. coli Polymerase I Complexed with dTMP", Nature 313:762 (1985).
Sanger et al., "A Rapid Method For Determining Sequences in DNA by Primed Synthesis" J. Mol. Biol. 94:441 (1975).
Mills et al., "Structure Independent Nucleotide Sequence Analysis", Proc. Natl. Acad. Sci. USA 76:2232 (1979).
Sanger et al., "DNA Sequencing with Chain Terminating Inhibitors", Proc. Natl. Acad. Sci., USA 74:5463 (1977).
Maat et al., "A Method for Sequencing Restriction Fragments with Dideoxynucleotide Triphosphates", Nucl. Acid. Res. 5:4537 (1978).
United States Biochemicals Advertisement, Extend the Limits of Sequencing with SEQUENASE (1987).
United States Biochemicals Advertisement, DNA Sequencing SEQUENASE (1987).
Kristensen et al., "T7 DNA Polymerase in Automated dideoxy sequencingt", Nuc. Acids Res. 16:3487 (1988).
Saiki et al., "Primer-Directed Enzymatic Amplification of DNA with a Thermostable DNA Polymerase", Science 239:487 (1988).
Wong et al., "Characterization of .beta.-thalassaemia Mutations Using Direct Genomic Sequencing of Amplified Single Copy DNA", Nature 330:384 (1987).
Johnston-Dow, et al., "Optimized Methods for Fluorescent and Radio Labelled DNA Sequencing," Biotechniques 5:754 (1987).
Rabussay, et al., "Electroporation of Mammalian and Plant Cells," Focus, 9(3), 1987.
BRL Catalog, "You Be The Judge".
McGraw, "Dideoxy DNA Sequencing with End-Labeled Oligonucleotide Primers," Analytical Biochemistry 143:298 (1984).
Hong, "Sequencing of Large Double-Stranded DNA Using the Dideoxy Sequencing Technique," Bioscience Reports 2:907 (1982).
Sanger, et al., "Use of DNA Polymerase I Primed by a Synthetic Oligoneucleotide to Determine a Nucleotide Sequence in f1 DNA," Proc. Natl. Sci., USA 70:1209 (1973).
Sanger, et al., "Cloning in Single-strand Bacteriophage as an Aid to Rapid DNA Sequencing," J. Mol. Biol. 143:161 (1980).
Zagursky, et al., "Rapid and Easy Sequencing of Large Linear Double-Stranded DNA and Supercoiled Plasmid DNA," Gene Anal. Techn. 2:89 (1985).
Maxam and Gilbert, "A New Method for Sequencing DNA," Proc. Natl. Acad. Sci., USA 74:560 (1977).
Pharmacia, "FPLC Pure, AMV Reverse Transcriptase Applications".
Beck, "Colorimetric-Detected DNA Sequencing," Anal. Bioch. 164:1 (1987).
Agellon and Chen, "Supercoiled Plasmid Sequencing," Gene Anal. Techn. 3:86 (1986).
Bartlett, et al., "Sequencing of Supercoiled Plasmid DNA," BioTechniques, 4:208 (1986).
Pharmacia, "For Sequencing Genomes, Or Just Kilobase," Analects, vol. 16, No. 1, pp. 1-3.
Pharmacia, "Sequencing Kit".
Church & Gilbert, Genomic Sequencing Proc. Natl. Acad. Sci., USA, 81:1991 (1984).
Ambrose et al., "Sequence Analysis of End-Labeled DNA Fragments by Solvolysis in Hot Aqueous Piperidine Solutions", Anal. Biochem. 169:151 (1988).
Ambrose et al., "Analysis of DNA Sequences Using a Single Chemical Cleavage Procedure", Biochemistry 24:6194 (1985).
Ambrose et al., "One-Lane Sequence Analysis of Oligodeoxyribonucleotides", Anal. Biochem. 159:24 (1986).
Helfman et al., "Escherichia coli: DNA Polymerases II and III: Activation by Magnesium of by Manganous Ions", Biochim. Biophys. Acta 447:175 (1976).
Deutscher, "Enzymatic Synthesis of Deoxyribonucleic Acid", J. Biol. Chem. 244:3019 (1969).
Kornberg, "DNA Replication", W. H. Freeman and Co., pp. 125-126.
Science/Technology Concentrates, C&EN, Jun. 13, 1988.
Rienitz et al., "On the Fidelity of DNA Polymerase .alpha.: The Influence of .alpha.-thio dNTPs, Mn.sup.2+ and Mismatch Repair", Nucl. Acids Res. 13:5685 (1985).
Hillebrand, "Template-Dependent Variation in the Relative Fidelity of DNA Polymerase I of E. coli in the Presence of Mg.sup.2+ Versus Mn.sup.2 ", Nucl. Acids Res. 12:3173 (1984).
Goodman et al., "On the Enzymatic Basis for Mutagenesis by Manganese", J. Biol. Chem. 258:3469 (1983).
Zakour et al., "Metal-induced Infidelity of DNA Synthesis", J. Cancer Res. Clin. Oncol. 99:187 (1981).
Gregerson et al., "Processive Nature of Reverse Transcription by Avian Myeloblastosis Virus Deoxyribonucleic Acid Polymerase", Biochemistry 19:301 (1980).
Allandeen, "Inhibition of Deoxyribonucleic Acid Polymerases of Human Leukemic Leukocytes by 2', 3'-Dedeoxythymidine Triphosphate", Biochem. Pharm. 29:1149 (1980).
Sirover et al., "On the Fidelity of DNA Replication", J. Biol. Chem. 254:5718 (1979).
Kunkel and Loef, "On the Fidelity of DNA Replication", J. Biol. Chem. 254:5718 (1979).
Nagamine et al., "Differences in the Effects of Manganese and Magnesium on Initiation and Elongation in the RNA Polymerase I Reaction", Biochim. Biophys. Acta 519:440 (1978).
Miyaki et al., "Effect of Metal Cations on Misincorporation by E. coli: DNA Polymerases", Biochem. Biophys. Res. Comm., 77:854 (1977).
Wang et al., "Effect of Mn.sup.2+ on the In Vitro Activity of Human Deoxyribonucleic Acid Polymerase .beta..sup.30 ", Biochemistry 16:4927 (1977).
Vamvakopoulos et al., "The Effect of Magnesium and Manganese Ions on the Structure and Template Activity for Reverse Transcriptase of Polyribocytidylate and its 2'-O-Methyl Derivative", Nucl. Acids Res. 4:3589 (1977).
Sirover, "On the Fidelity of DNA Replication", J. Biol. Chem. 252:3605 (1977).
Eichler et al., "Effects of Mn.sup.2+ and Mg.sup.2+ on Activity of Human DNA Polymerase-B" (abstract) Federation Proceedings, vol. 36, No. 1 (1977).
Sirover et al., "Metal Activation of DNA Synthesis", Biochem. Biophys., Res. Comm. 70:812 (1976).
Tamir et al., "Multiple Enzyme-Manganese-Nucleotide Complexes of E. coli DNA Polymerase I" (abstract) Federation Proceedings, 31:912 (1972).
Litman, "The Differential Effect of Magnesium and Manganese Ions on the Synthesis of Poly(dGdC) and Micrococcus Leuteus DNA by Micrococcus Leuteus DNA Polymerase", J. Mol. Biol. 61:1 (1971).
Razzaki et al., "Effect of Variations in the Conditions of DNA Synthesis Upon the Accuracy of DNA Replication", In Basic Life Sciences, vol. 31-Genetic Consequences of Nucleotide Pool Imbalance, 175-187.
Kornberg, "DNA Replication", W. H. Freeman and Co., 150-151.
Berg et al., "The Synthesis of Mixed Polynucleotides Containing Ribo-and Deoxyribonucleotides by Purified Preparations of DNA Polymerase from E. coli", Information Macromolecules-A Symposium, 1963, 467-483.
Barnes, "DNA Sequencing by Partial Ribosubstitution", J. Mol. Biol. 119:83 (1978).
Van de Sande et al., "Studies on Polynucleotides". J. Biol. Chem. 247:6140 (1972).
Salser et al., "Nucleotide Sequencing of DNA: Preliminary Characterization of the Products of Specific Cleavages at Guanine or Adenine Residues", Proc. Natl. Acad. Sci. USA 69:238 (1972).
Gish et al., "DNA and RNA Sequence Determination Based on Phosphorothioate Chemistry", Science 240:1520 (1988).
Mills and Kramer, "Structure-Independent Nucleotide Sequence Analysis", Proc. Natl. Acad. Sci., USA 76:2232 (1979).
Bethesda Research Laboratories, "M13 Cloning/Dideoxy Sequencing Manual.
Barnes, "Sequencing DNA with Dideoxyribonucleotides as Chain Terminators: Hints and Strategies for Big Projects", Methods in Enzymology 152:538 (1987).
Ambrose et al., "DNA Sequencing: Chemcial Methods", Methods in Enzymology 152:522 (1987).
Kolodner and Richardson, "Replication of duplex DNA b
Richardson Charles C.
Tabor Stanley
President and Fellows of Harvard College
Zitomer Stephanie W.
LandOfFree
DNA sequencing does not yet have a rating. At this time, there are no reviews or comments for this patent.
If you have personal experience with DNA sequencing, we encourage you to share that experience with our LandOfFree.com community. Your opinion is very important and DNA sequencing will most certainly appreciate the feedback.
Profile ID: LFUS-PAI-O-1567080