DNA coding for polypeptide participating in biosynthesis of...

Chemistry: molecular biology and microbiology – Micro-organism – tissue cell culture or enzyme using process... – Preparing heterocyclic carbon compound having only o – n – s,...

Reexamination Certificate

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C536S063000, C536S063000, C530S300000, C435S320100, C435S243000, C435S183000

Reexamination Certificate

active

08008049

ABSTRACT:
The present invention provides polypeptides that participate in the biosynthesis of the pladienolide macrolide compounds, DNA that encodes these polypeptides and variants of this DNA, transformants that maintain all or a portion of this DNA or variant thereof, and a method of producing the pladienolide macrolide compounds using these transformants. More particularly, it provides an isolated pure DNA that contains at least one region encoding a polypeptide that participates in pladienolide biosynthesis; polypeptide encoded by this DNA; a self-replicating or integrated-replicating recombinant plasmid carrying this DNA; a transformant maintaining this DNA; and a method of producing a pladienolide, characterized by culturing this transformant on culture medium and collecting pladienolide from this culture medium.

REFERENCES:
patent: 5824513 (1998-10-01), Katz et al.
patent: 6004787 (1999-12-01), Katz et al.
patent: 6503737 (2003-01-01), Reeves et al.
patent: 7026352 (2006-04-01), Mizui et al.
patent: 7375088 (2008-05-01), Bachmann et al.
patent: 2004/0266008 (2004-12-01), Bachmann et al.
patent: 2005/0084859 (2005-04-01), Nakajima et al.
patent: 2005/0245514 (2005-11-01), Kotake et al.
patent: 2006/0141589 (2006-06-01), Okuda et al.
patent: 2006/0234337 (2006-10-01), Arisawa et al.
patent: 2006/0235002 (2006-10-01), Nagai et al.
patent: 2009/0215134 (2009-08-01), Machida et al.
patent: 2010/0313300 (2010-12-01), Nakajima et al.
patent: 2463855 (2003-05-01), None
patent: 2494536 (2004-02-01), None
patent: 2507641 (2004-06-01), None
patent: 1489583 (2004-04-01), None
patent: 1 380 579 (2004-01-01), None
patent: 1457558 (2004-09-01), None
patent: 1500704 (2005-01-01), None
patent: 1508570 (2005-02-01), None
patent: 1 541 570 (2005-06-01), None
patent: 1 705 247 (2006-09-01), None
patent: WO 93/12236 (1993-06-01), None
patent: WO-93/13663 (1993-07-01), None
patent: WO02/060890 (2002-08-01), None
patent: WO-02/060890 (2002-08-01), None
patent: WO 02/092801 (2002-11-01), None
patent: WO-03/008738 (2003-01-01), None
patent: WO 03/040370 (2003-05-01), None
patent: WO-03/087381 (2003-10-01), None
patent: WO 03/099813 (2003-12-01), None
patent: WO-2004/011459 (2004-02-01), None
patent: WO-2004/011661 (2004-02-01), None
patent: WO 2004/050890 (2004-06-01), None
patent: WO 2004/061116 (2004-07-01), None
patent: WO 2004/065401 (2004-08-01), None
patent: WO 2005/052152 (2005-06-01), None
patent: WO 2006/009276 (2006-01-01), None
Lamb et al (Journal of Biological Chemistry. 2002; 277(27): 24000-24006).
Machida et al. (Journal of Bioscience and Bioengineering. 2008; 105(6): 649-654).
Guilhot et al. (Journal of Bacteriology. Jan. 1994; 176(2): 535-539).
Sakai, Takashi et al. “Pladienolides, New Substances from Culture of Streptomyces platenesis Mer-11107 1. Taxonomy, Fermentation, Isolation and Screening” The Journal of Antibiotics vol. 57 No. 3, Mar. 2004. pp. 173-179. XP-002462515.
Schwecke, Torsten et al. “The biosynthetic gene cluster for the polyketide immunosuppressant rapamycin” Proc Natl. Acad. Sci. USA vol. 92. pp. 7839-7843, Aug. 1995. XP-000652288.
Seki-Asano, Mitsuko et al. “Isolation and characterization of a new 12-membered macrolide FD-895” The Journal of Antibiotics vol. 47 No. 12 pp. 1395-1401, Dec. 1, 1994. XP-002951021.
Ikeda et al., “Biosynthesis, Regulation, and Genetics of Macrolide Production,”Macrolide Antibiotics: Chemistry, Biology, and Practice, Second Edition, edited by Satoshi Omura, Academic Press. 2002, pp. 285-326.
Robert McDaniel et al., Proc. Natl. Acad. Sci. USA, vol. 96, pp. 1846-1851 and Corrections, PNAS Apr. 25, 2000 vol. 97, p. 5011, 5890.
J. M. Weber, et al., Science, vol. 252, (1991) pp. 114-117.
Blaine A. Pfeifer, Science, vol. 291, (Mar. 2, 2001) pp. 1790-1792.
Xue et al., Proc. Natl. Acad. Sci. USA, 1998, 95(21), pp. 12111-12116.
Donadio et al., Proc. Natl. Acad. Sci. USA, 1993, 90(15), pp. 7119-7123.
Hopwood et al., Annu. Rev. Genet., 1990, 24, pp. 37-66.
Katz et al., Annu. Rev. Microbiol., 1993, 47, pp. 875-912.
“Cell Technology,” vol. 14, No. 5, pp. 591-593, 1995.
Beck et al., “Nucleotide sequence of bacteriophage fd DNA,” Nucleic Acids Research, vol. 5, No. 12, pp. 4495-4503, Dec. 1978.
Bibb et al., “Genetic Studies of the Fertility Plasmid SCP2* Variants in Streptomyces coelicolor A3(2),” Journal of General Microbiology, vol. 126, pp. 427-442, 1981.
Bibb et al., “Nucleotide sequences encoding and promoting expression of three antibiotic resistance genes indigenous to Streptomyces,” Mol. Gen. Genet., vol. 199, pp. 26-36, 1985.
Bibb et al., “The mRNA for the 23S rRNA methylase encoded by the ermE gene ofSaccharopolyspora erythraeais translated in the absense of a conventional ribosome-binding site,” Molecular Microbiology, vol. 14, No. 3, pp. 533-545, 1994.
Chater, “Streptomyces Phages and Their Applications to Streptomyces Genetics,” The Bacteria, vol. IX, Chapter 5, pp. 119-158, 1986.
Chinese Office Action, dated Feb. 5, 2010, for Chinese Application No. 2006800182893.
Decker et al., “Cloning and Characterization of a Polyketide Synthase Gene fromStreptomyces fradiaeTü 2717, Which Carries the Genes for Biosynthesis of the Angucycline Antibiotic Urdamycin A . . . ,” Journal of Bacteriology, vol. 177, No. 21, pp. 6126-6136, Nov. 1995.
European Office Action, dated Dec. 21, 2009, for European Application No. 04799902.4.
Hyun et al., “An Efficient Approach for Cloning P450 Hydroxylase Genes from Actinomycetes,”Journal of Microbiology and Biotechnology, vol. 8. No. 3, pp. 295-299, XP008076424, 1998.
International Preliminary Report on Patentability, dated Jul. 24, 2006, for Application No. PCT/JP2004/17906.
International Search Report, dated Jul. 4, 2006 for PCT/JP2006/310835.
International Search Report, dated Mar. 8, 2005, for Application No. PCT/JP2004/017906.
Kendall et al., “Complete Nucleotide Sequence of the Streptomyces lividans Plasmid pIJI01 and Correlation of the Sequence with Genetic Properties,” Journal of Bacteriology, vol. 170, No. 10, pp. 4634-4651, Oct. 1988.
Kojima et al., “The rpoZ Gene, Encoding the RNA Polymerase Omega Subunit, Is Required for Antibiotic Production and Morphological Differentiation inStreptomyces kasugaensis,” Journal of Bacteriology, vol. 184, No. 23, pp. 6417-6423, Dec. 2002.
Lampel et al., “Cloning and Sequencing of a Gene Encoding a Novel Extracellular Neutral Proteinase from Streptomyces sp. Strain C5 and Expression of the Gene inStreptomyces lividans1326,” Journal of Bacteriology, vol. 174, No. 9, pp. 2797-2808, May 1992.
Machida et al., “Increase in Pladienolide D Production Rate Using a Streptomyces Strain Overexpressing a Cytochrome P450 Gene,” Journal of Bioscience and Bioengineering, 2008, vol. 105, No. 6, pp. 649-654.
McAlpine et al., “Microbial Genomics as a Guide to Drug Discovery and Structural Elucidation: ECO-02301, a Novel Antifungal Agent, as an Example,” J. Natl. Prod., vol. 68, pp. 493-496, 2005.
Neal et al., “Nucleotide sequence analysis reveals similarities between proteins determining methylenomycin A resistance in Streptomyces and tetracycline resistance in eubacteria,” Gene, vol. 58, pp. 229-241, 1987.
Schmid et al., “AUD4, a new amplifiable element fromStreptomyces lividans,” Microbiology, vol. 145, pp. 3331-3341, 1999.
Shah et al., “Cloning, Characterization and Heterologous Expression of a Polyketide Synthase and P-450 Oxidase Involved in the Biosynthesis of the Antibiotic Oleandomycin,” The Journal of Antibiotics, vol. 53, No. 5, pp. 502-508, May 2000.
Takano et al., “Construction of thiostrepton-inducible, high-copy-number expression vectors for use inStreptomyces spp,” Gene, vol. 166, Issue 1, pp. 133-137, Dec. 1, 1995.
Triglia et al., “A procedure for in vitro amplification of DNA segments that lie outside the boundaries of known sequences,” Nucleic Acids Research, vol. 16, p

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