Chemistry: molecular biology and microbiology – Animal cell – per se ; composition thereof; process of...
Reexamination Certificate
2005-08-09
2009-10-06
Vogel, Nancy (Department: 1636)
Chemistry: molecular biology and microbiology
Animal cell, per se ; composition thereof; process of...
C435S006120, C435S070100
Reexamination Certificate
active
07598080
ABSTRACT:
A method of diagnosing the source of local, acute inflammation has been developed based on the discovery that white cells have different patterns of gene expression, and therefore protein markers, depending on the origin of the inflammation. These differences can be readily accessed by analysis of the white cells obtained at a site to be analyzed, for example, in the synovial fluid of a knee. The analysis, by comparison with the analysis of white cells present in known conditions, can be used to differentiate between inflammation due to bacterial infection, arthritis or gout, for example. The examples demonstrate differential gene expression in cells present in synovial fluid biopsies from patients with confirmed bacterial infection as compared to patients with aseptic loosening or patients with inflammation due to gout.
REFERENCES:
patent: 4366241 (1982-12-01), Tom et al.
patent: 4376110 (1983-03-01), David et al.
patent: 4517288 (1985-05-01), Giegel et al.
patent: 4837168 (1989-06-01), De Jaeger et al.
patent: 5143854 (1992-09-01), Pirrung et al.
patent: 5800992 (1998-09-01), Fodor et al.
patent: 5837832 (1998-11-01), Chee et al.
patent: 5953727 (1999-09-01), Akerblom et al.
patent: 6365352 (2002-04-01), Yerramilli
patent: 2003/0077611 (2003-04-01), Slepnev
patent: 2003/0082512 (2003-05-01), Yerramilli
patent: 2005/0037344 (2005-02-01), Stuhlmuller et al.
patent: 2006/0294604 (2006-12-01), Fridman et al.
patent: WO 93/09668 (1993-05-01), None
patent: WO 99/32660 (1999-07-01), None
Stratagene 1988 catalog.
Yum et al. Involvement of Phosphoinositide 3—Kinases in Neutrophil Activation and the Development of Acute Lung Injury. J. Immunology 161: 6601-6608, 2001.
Altschul, et al., “Issues in searching molecular sequence databases”,Nature Genet., 6:119-129 (1994).
Altschul, “A protein alignment scoring system sensitive at all evolutionary distances”,J. Mol. Evol., 36:290-300 (1993).
Golub, et al., “Molecular classification of cancer: class discovery and class prediction by gene expression monitoring”,Science, 286(5439):531-7 (1999).
Henikoff and Henikoff, “Amino acid substitution matrices from protein blocks”,Proc. Natl. Acad. Sci. USA, 89:10915-10919 (1992).
Huse, et al., “Generation of a large combinatorial library of the immunoglobulin repertoire in phage lambda”,Science, 246:1275-1281 (1989).
Jungblut and Thiede, “Protein identification from 2-DE gels by MALDI mass spectrometry”,Mass Spectr. Rev., 16:145-162 (1997).
Karlin, et al., “Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes”,Proc. Natl. Acad. Sci. USA, 87:2264-2268 (1990).
Kohler and Milstein, “Continuous cultures of fused cells secreting antibody of predefined specificity”,Nature, 256:495-497 (1975).
Lockhart, et al., “Expression monitoring by hybridization to high-density oligonucleotide arrays”,Nat. Biotechnol., 14:1675-1680 (1996).
McGall, et al., “Light-directed synthesis of high-density oligonucleotide arrays using semiconductor photoresists”,Proc. Nat. Acad. Sci. USA, 93:13555-13460 (1996).
Ward, et al., “Binding activities of a repertoire of single immunoglobulin variable domains secreted fromEscherichia coli”, Nature, 341:544-546 (1989).
Barnes, et al., “Gene expression in juvenile arthritis and spondyloarthropathy: pro-angiogenic ELR+ chemokine genes relate to course of arthritis”,Rheumatology, 43(8):973-9 (2004).
Deirmengian, et al., “The Mark Coventry Award: white blood cell gene expression: a new approach toward the study and diagnosis of infection”,Clin Orthop Relat Res., 440:38-44 (2005).
Friese, et al., “Release of endogenous anti-inflammatory complement regulators FHL-1 and factor H protects synovial fibroblasts during rheumatoid arthritis”,Clin Exp Immunol., 132(3):485-95 (2003).
Heller, et al., “Discovery and analysis of inflammatory disease-related genes using cDNA microarrays”,Proc Natl Acad Sci U S A., 94(6):2150-5 (1997).
O'Hara, et al., “Local expression of the serum amyloid A and formyl peptide receptor-like 1 genes in synovial tissue is associated with matrix metalloproteinase production in patients with inflammatory arthritis”,Arthritis Rheum., 50(6):1788-99 (2004).
Pufe, et al., “Expression of pleiotrophin, an embryonic growth and differentiation factor, in rheumatoid arthritis”,Arthritis Rheum., 48(3):660-7 (2003).
Stuhlmuller, et al., “Identification of known and novel genes in activated monocytes from patients with rheumatoid arthritis”,Arthritis Rheum., 43(4):775-90 (2000).
Yerramilli, et al., “RNA expression patterns change dramatically in human neutrophils exposed to bacteria” Blood, 97(8):2457-68 (2001).
Zanders, et al., “Analysis of immune system gene expression in small rheumatoid arthritis biopsies using a combination of subtractive hybridization and high-density cDNA arrays”J Immunol Methods., 233(1-2):131-40 (2000).
Joike Michele K.
Pabst Patent Group LLP
Vogel Nancy
LandOfFree
Diagnostic assay for source of inflammation does not yet have a rating. At this time, there are no reviews or comments for this patent.
If you have personal experience with Diagnostic assay for source of inflammation, we encourage you to share that experience with our LandOfFree.com community. Your opinion is very important and Diagnostic assay for source of inflammation will most certainly appreciate the feedback.
Profile ID: LFUS-PAI-O-4117447