Detection of nucleic acids from whole blood

Details Detection of nucleic acids from whole blood Detection of nucleic acids from whole blood

2011-04-19

2011-04-19

Whisenant, Ethan (Department: 1634)

Chemistry: molecular biology and microbiology

Measuring or testing process involving enzymes or...

Involving nucleic acid

C536S023100, C536S024300

Reexamination Certificate

active

07927798

ABSTRACT:
Methods of detecting one or more nucleic acids from whole blood or plasma are provided. The nucleic acids are captured on a solid support and detected. Compositions, kits, and systems related to the methods are also described.

REFERENCES:
patent: 4868105 (1989-09-01), Urdea et al.
patent: 5093232 (1992-03-01), Urdea et al.
patent: 5122599 (1992-06-01), Barnett et al.
patent: 5124246 (1992-06-01), Urdea et al.
patent: 5185244 (1993-02-01), Wallace
patent: 5198357 (1993-03-01), Holmovist et al.
patent: 5334499 (1994-08-01), Burdick et al.
patent: 5374524 (1994-12-01), Miller
patent: 5393672 (1995-02-01), Ness et al.
patent: 5543305 (1996-08-01), Cummins et al.
patent: 5635352 (1997-06-01), Urdea et al.
patent: 5681697 (1997-10-01), Urdea et al.
patent: 5681702 (1997-10-01), Collins et al.
patent: 5712383 (1998-01-01), Sheridan et al.
patent: 5747244 (1998-05-01), Sheridan et al.
patent: 5780227 (1998-07-01), Sheridan et al.
patent: 5804684 (1998-09-01), Su
patent: 5849481 (1998-12-01), Urdea et al.
patent: 5945515 (1999-08-01), Chomczynski
patent: 6007994 (1999-12-01), Ward et al.
patent: 6221589 (2001-04-01), Lane et al.
patent: 6232462 (2001-05-01), Collins et al.
patent: 6235465 (2001-05-01), Kolberg et al.
patent: 6268147 (2001-07-01), Beattie et al.
patent: 6306643 (2001-10-01), Gentalen et al.
patent: 6352827 (2002-03-01), Lin et al.
patent: 6418382 (2002-07-01), Rothberg et al.
patent: 6472187 (2002-10-01), Tonoike et al.
patent: 6562575 (2003-05-01), Dahl
patent: 6610475 (2003-08-01), Kacian et al.
patent: 6670464 (2003-12-01), Shimkets et al.
patent: 6673914 (2004-01-01), Hoon
patent: 6852490 (2005-02-01), Gentalen et al.
patent: 7033758 (2006-04-01), Kenny et al.
patent: 2002/0034754 (2002-03-01), Reed et al.
patent: 2002/0172953 (2002-11-01), Mirkin et al.
patent: 2002/0187470 (2002-12-01), Casey et al.
patent: 2003/0211489 (2003-11-01), Shen et al.
patent: 2004/0086930 (2004-05-01), Tereba et al.
patent: 2004/0115686 (2004-06-01), Dolginow et al.
patent: 2005/0009063 (2005-01-01), Xia et al.
patent: 2005/0019842 (2005-01-01), Prober et al.
patent: 2005/0170370 (2005-08-01), Rabbani et al.
patent: 2005/0282220 (2005-12-01), Prober et al.
patent: 2006/0172284 (2006-08-01), Zheng et al.
patent: 2006/0263769 (2006-11-01), Luo et al.
patent: 2006/0286583 (2006-12-01), Luo et al.
patent: 2007/0015188 (2007-01-01), Luo et al.
patent: 2008/0220979 (2008-09-01), Wang et al.
patent: 2009/0170060 (2009-07-01), Kermekchiev et al.
patent: 1 428 892 (2004-06-01), None
patent: WO 94/00598 (1994-06-01), None
patent: WO 01/94632 (2001-12-01), None
Lo et al., Fetal DNA in Maternal plasma : Biology and Diagnostic Applications. Clinical Chemistry 46(12) : 1903-1906 (2000).
Higuchi R., DNA from Whole blood for PCR (One page from the Jackson Laboratory) Amplifications 2 :1-3 (1989).
Al-Soud et al. A sample preparation method which facilitates detection of bacteria in blood cultures by the polymerase chain reaction. J. Microbiol. Methods 32:217-224 (1998).
Narayanan S. Overview of principles and current uses of DNA probes in clinical and laboratory medicine. Ann Clin Lab Sci 1992;22:353-376.
Lewin et al., A simple method for DNA extraction from leukocytes for use in PCR. Biotechniques 13:522-524. (1992).
Mercier B, Gaucher C, Feugeas O, Mazurier C. Direct PCR from whole blood, without DNA extraction. Nucleic Acids Res 18:5908 (1990).
Balnaves ME, Nasioulas S, Dahl HH, Forrest S. Direct PCR from CVS, blood lysates for detection of cystic fibrosis and Duchenne muscular dystrophy deletions. Nucleic Acids Res 19:1155 (1991).
Application Note : Total RNA purification from whole blood. Applied Biosystems (2002).
Application Note : Whole genome amplification from crude blood lysates. Amersdham Biosciences. (2003).
Zolg et al. High Salt Lysates: a Simple Method to Store Blood Samples Without Refrigeration for Subsequent Use with DNA Probes. Am. J. Trop. Med. Hyg., 39(1) : 33-40 (1988).
De Vries et al. Cell lysates obtained from whole blood cicumvents DNA isolation. Clinical Chemistry 47 (9) :1701-1702 (2001).
Ugozzoli et al. Detection of specific alleles by using allele—specific primer extension followed by capture on solid support. GATA 9(4) :107-112 (1992).
Nordvag et al., Direct PCR of washed blood cells. Biotechniques 12:490-493 (1992).
Van Cleve et al. (1998) “Direct quantification of HIV by flow cytometry using branched DNA signal amplification,”Molecular and Cellular Probes, 12:243-247.
Malygin et al. (1996) “Hybridization of two oligodeoxynucleotides to both strands of an RNA hairpin structure increases the efficiency of RNA-DNA duplex formation,”FEBS Letters, 392:114-116.
Player et al. (2001) “Single-copy gene detection using branched DNA (bDNA) in-situ hybridization,”The Journal of Histochemistry and Cytochemistry, 49(5):603-611.
Schweitzer & Kingsmore (2001) “Combining nucleic acid amplification and detection,”Curr. Op Biotechnol., 12(1):21-27.
Shah et al. (1994) “Novel, ultrasensitive, Q-beta, replicase-amplified hybridization assay for detection ofChlamydia trachomatis,” J. Clin. Microbiol., 32(11):2718-2724.
Shah et al. (1995) “Detection ofMycobacterium tuberculosisdirectly from spiked human sputum by Q-beta replicase-amplified assay,”J. Clin. Microbiol., 33(2):322-328.
Shah et al. (2003) “Ultra-sensitive and specific detections of porcine endogenous retrovirus (PERV) using a sequence-capture real-time PCR approach,”J. Virol.Meth., 109:209-216.
Stone et al. (1996) “Detection of rRNA from four respiratory pathogens using an automated Qα replicase assay,”Mol. Cell. Probes, 10:359-370.
Harris et al. (1996) “Detection ofTrypanosoma bruceispp. In human blood by a nonradioactive branched DNA-based technique,”J. Clin. Microbiol., 34(10):2401-2407.
Nolte (1998) “Branched DNA signal amplification for direct quantitation of nucleic acid sequences in clinical specimens,”Advances in Clinical Chemistry, 33(1):201-235.
Akane et al. (1994) “Identification of the heme compound copurified with deoxyribonucleic acid (DNA) from bloodstains, a major inhibitor of polymerase chain reaction (PCR) amplification,”J Forensic Sci, 39(2):362-372.
Al-Soud & Radstrom (2001) “Purification and Characterization of PCR-Inhibitory Components in Blood Cells,”J. Clin. Microbiol, 39(2):485-493.
Al-Soud et al. (2000) “Identification and Characterization of Immunoglobulin G in Blood as a Major Inhibitor of Diagnostic PCR,”J. Clin. Microbiol. 38(1):345-350.
Baechler et al. (2004) “Expression levels for many genes in human peripheral blood cells are highly sensitive to ex vivo incubation,”Genes Immun, 5(5):347-353.
Wettinger et al. (2005). “High throughput mRNA profiling highlights associations between myocardial infarction and aberrant expression of inflammatory molecules in blood cells,”Blood, 105(5):2000-2006.
Breit et al. (2004) “Impact of pre-analytical handling on bone marrow mRNA gene expression,”Br J Haematol, 126(2):231-243.
Bushnell et al. (1999) “ProbeDesigner: for the design of probesets for branched DNA (bDNA) signal amplification assays,”Bioinformatics15:348-355.
Bustin and Nolan (2004) “Pitfalls of quantitative real-time reverse-transcription polymerase chain reaction,”J Biomol Tech, 15(3):155-166.
Bustin (2002) “Quantification of mRNA using real-time reverse transcription PCR (RT-PCR): trends and problems,”J Mol Endocrinol, 29(1):23-39.
Bustin et al. (2005) “Quantitative real-time RT-PCR—a perspective,”J Mol Endocrinol, 34(3): 597-601.
Collins et al. (1997) “A branched DNA signal amplification assay for quantification of nucleic acid targets below 100 molecules/ml,”Nucleic Acids Research, 25(15):2979-2984.
Collins et al. (1998) “Branched DNA (bDNA) technology for direct quantification of nucleic acids: design and performance,” inGene Quantification, F. Ferre, ed.
De Groote et

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