Detection and typing of bacterial strains

Chemistry: molecular biology and microbiology – Micro-organism – tissue cell culture or enzyme using process... – Preparing compound containing saccharide radical

Reexamination Certificate

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C435S006120, C435S091100

Reexamination Certificate

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07919277

ABSTRACT:
Methods for the detection and typing of bacterial strains from food products and dietary supplements, environmental samples, in vivo/in vitro samples, and for studying the natural diversity of the species are disclosed. Potential applications also include product development and/or detection and differentiation of new bacterial strains.

REFERENCES:
patent: 5753467 (1998-05-01), Jensen et al.
patent: 6395475 (2002-05-01), Leggett et al.
patent: 6610836 (2003-08-01), Breton et al.
patent: 6632633 (2003-10-01), Slijkhuis et al.
patent: 2002/0034748 (2002-03-01), Quake et al.
patent: 2002/0055628 (2002-05-01), Keim et al.
patent: 2003/0219778 (2003-11-01), Ferreira et al.
patent: WO 03/084989 (2003-10-01), None
Cowan, L.S., and Crawford, J.T., “Genotype Analysis ofMycobacterium tuberculosisIsolates from a Sentinael Surveillance Population,”Emerging Infectious Diseases, Nov. 2002, pp. 1294-1302, vol. 8, No. 11.
Driscoll, J.R., et al., “Spoligologos: A Bioinformatic Approach to Displaying and AnalyzingMycobacterium tuberculosisData,”Emerging Infectious Diseases, Nov. 2002, pp. 1306-1309, vol. 8, No. 11.
Ertugrul, N., et al, “BOX-polymerase Chain Reaction-based DNA Analysis of NonserotypeableStreptococcus pneumoniaeImplicated in Outbreaks of Conjunctivitis,”J. Infect. Dis., Nov. 1997, pp. 1401-1405, vol. 176, No. 5.
Filliol, I., et al., “Detection of a Previously Unamplified Spacer Within the DR Locus ofMycobacterium tuberculosis: Epidemiological Implications,”J. Clin. Microbiol., Mar. 2000, pp. 1231-1234, vol. 38, No. 3.
Groenen, P.M., et al., “Nature of DNA Polymorphism in the Direct Repeat Cluster ofMicrobacterium tuberculosis; Application for Strain Differentiation by a Novel Typing Method,”Mol. Microbiol., 1993, pp. 1057-1065, vol. 10.
Ishino, Y., et al., “Nucleotide Sequence of the iap Gene, Responsible for Alkaline Phosphatase Isozyme Conversion inEscherichia coli, and Identification of the Gene Product,”J. Bacteriol., 1987, pp. 5429-5433, vol. 169.
Jansen, R., et al., “Identification of Genes that are Associated with DNA Repeats in Prokaryotes,”Molecular Microbiology, 2002, pp. 1565-1576, vol. 43, No. 6.
Jansen, R., et al., “Identification of a Novel Family of Sequence Repeats Among Prokaryotes,”OMICS, A Journal of Integrative Biology, 2002, pp. 23-33, vol. 6, No. 1.
Kamerbeek, J., et al., “Simultaneous Detection and Strain Differentiation ofMycobacterium tuberculosisfor Diagnosis and Epidemiology,”J. Clin. Microbiol., Apr. 1997, pp. 907-914, vol. 35, No. 4.
Kanduma, E., et al., “Molecular Methods forMycobacterium tuberculosisStrain Typing: A Users Guide,”Journal of Applied Microbiology, 2003, pp. 781-791, vol. 94.
Mojica, F.J., et al., “MicroCorrespondence: Biological Significance of a Family of Regularly Spaced Repeats in the Genomes of Archaea, Bacteria and Mitochondria,”Molecular Microbiology, 2000, pp. 244-246, vol. 36, No. 1.
Mokrousov, I., et al., “Novel IS6110Insertion Sites in the Direct Repeat Locus ofMycobacterium tuberculosisClinical Strains from the St. Petersburg Area of Russia and Evoluntionary and Epidemiological Considerations,”J. Clin Microbiol., Apr. 2002, pp. 1504-1507, vol. 40, No. 4.
Van Belkum, A., et al., “Novel BOX Repeat PCR Assay for High-Resolution Typing ofStreptococcus pneumoniaeStrains,”J. Clin. Microbiol., May 1996, pp. 1176-1179, vol. 34, No. 5.
Van Belkum, A., et al., “Short-Sequence DNA Repeats in Prokaryotic Genomes,”Microbiol. Mol. Biol. Rev., Jun. 1998, pp. 275-293, vol. 62, No. 2.
Van Der Zanden, A.G.M., et al., “Improvement of Differentiation and Interpretability of Spoligotyping forMycobacterium tuberculosisComplex Isolates by Introduction of New Spacer Oligonucleotides,”J. Clin. Microbiol., Dec. 2002, pp. 4628-4639, vol. 40, No. 12.
Altermann et al., “Complete genome sequence of the probiotic lactic acid bacteriumLactobacillus acidophilusNCFM.” Proceedings of the National Academy of Sciences of USA, vol. 102, No. 11, p. 3906-3912 (2005).
Berthier et al., “Rapid species identification within two groups of closely related lactobacilli using PCR primers that target the 16S/23S rRNA spacer region.”FEMS Microbiology Letters, Amsterdam, NL., vol. 161, No. 1, p. 97-106 (1998).
Database EMBL (Online), Accession No. AA934301, “SWOvL3CAN12H09Onchocerca volvulusinfective larva cDNA (SAW94WL-OvL3)Onchocerca volvuluscDNA clone onch669 5′, mRNA sequence.” (Apr. 29, 1998).
Database EMBL (Online), Accession No. AR383507, “Sequence 236 from US Patent 6610836.” (Dec. 19, 2003).
Database EMBL (Online), Accession No. AR408683, “Sequence 43 from US Patent 6632633.” (Dec. 19, 2003).
Database EMBL (Online), Accession No. AY341565, “Lactobacillus brevisstrain BJ1-1 16S ribosomal RNA gene, partial sequence.” (Aug. 28, 2003).
Database EMBL (Online), Accession No. AZ587570, “1M0395P16F Mouse 10kb plasmid UUGC1M libraryMus musculusgenomic clone UUGC1M0395P16 F, DNA sequence.” (Dec. 17, 2000).
Database EMBL (Online), Accession No. CB550968, “MMSP0038—F12 MMSPMacaca mulattacDNA, mRNA sequence.” (Jun. 3, 2003).
Jansen Rund et al., “Identification of a novel family of sequence repeats among prokaryotes.”OMICS A. Journal of Integrative Biology, vol. 6, No. 1, p. 23-33 (2002).
Kanduma et al., “Molecular Methods forMycobacterium tuberculosisstrain typing: A users guide.” Journal of Applied Microbiology, vol. 94, No. 5, p. 781-791 (2003).
Song et al., “Rapid identification of 11 human intestinalLactobacillusspecies by multiplex PCR assays using group- and species specific primers derived from the 16S-23S rRNA intergenic spacer region and its flanking 23S rRNA.”FEMS Microbiology Letters, Amsterdam, NL., vol. 187, No. 2, p. 167-173 (2000).
Supply et al., “Variable human minisatellite-like regions in theMycobacterium tuberculosisgenome.” Molecular Microbiology, vol. 36, No. 3, p. 762-771 (2000).

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