Data processing: database and file management or data structures – Database design – Data structure types
Patent
1997-05-15
1999-10-12
Choules, Jack M.
Data processing: database and file management or data structures
Database design
Data structure types
707 10, 435 6, G06F 1730
Patent
active
059667125
ABSTRACT:
Disclosed is a relational database system for storing and manipulating biomolecular sequence information, the database including genomic libraries for a plurality of types of organisms, the libraries having multiple genomic sequences, at least some of which represent open reading frames located along a contiguous sequence on each the plurality of organisms' genomes, and a user interface capable of receiving a selection of two or more of the genomic libraries for comparison and displaying the results of the comparison. The system also provides a user interface capable of receiving a selection of one or more probe open reading frames for use in determining homologous matches between such probe open reading frame(s) and the open reading frames in the genomic libraries, and displaying the results of the determination.
REFERENCES:
patent: 5523208 (1996-06-01), Kohler et al.
patent: 5706498 (1998-01-01), Fujimiya et al.
patent: 5840484 (1998-11-01), Seilhamer
Keele J. E. et al. "A Conceptual Database Model for Genomic Research" Journal of Computational Biology, vol. 1, No. 1, pp. 65-75, 1994.
Fickett, J. W. finding genes by computer the state of the art, TIG, vol. 12, No. 8. pp. 316-320, Sep. 1996.
National Center for Biotechnology Information; UniGene. Internet--http://www3
cbi.nlm.nih.gov/unigene (Downloaded Dec. 23, 1997).
National Center for Biotechnology Information; GenBank. Internet--http://www3.ncbi.nlm.nih.gov/web/genbank (Downloaded Dec. 23, 1997).
MAGPIE; Automated Genome Project Investigation Environment. Internet--http://www.mcs.anl.gov/home/gaasterl.magpie.html (Downloaded Dec. 23, 1997).
Stanford University, Stanford Genomic Resources. Internet--http://genome-www.stanford.edu, Sep. 22, 1996 and Dec. 20, 1997.
Incyte Pharmaceuticals, LIFESEQ Version 4.2 Release Notes and Physical Data Model, Oct. 1996.
Incyte Pharmaceuticals, LIFESEQ Version 3.4 Release Notes, Jan. 1996.
Incyte Pharmaceuticals, LIFESEQ Version 2.5 Release Notes, Jun. 1995.
Incyte Pharmaceuticals, LIFESEQ Version 3.0 Release Notes, Sep. 1995.
Incyte Pharmaceuticals, LIFESEQ Version 4.0 Release Notes, Apr. 1996.
Incyte Pharmaceuticals, Introduction to the LIFESEQ Database, Version 3.4, Jan. 1996.
Incyte Pharmaceuticals, LIFESEQ Training Manual, Version 4.1, Jul. 1996.
Matsubara, et al., "Identification of New Genes by Systematic Analysis of cDNAs and Database Construction", Current Opinion in Biology, vol. 4, pp. 672-677 (1993).
Lew, K., "GDB 6.0 Goals", http://gbd.gbdnet.ad.jp/gdb/docs/gdb6-goals.html., pp. 1-5 (Mar. 3, 1996).
The Institute for Genomic Research, TIGR Database. Internet--http://www.tigr.org (Downloaded Dec. 23, 1997).
National Center for Biotechnology Information (Index). Internet--http://www3.ncbi.nlm.nih.gov/ (Downloaded Dec. 23, 1997).
National Center for Biotechnology Information; ENTREZ. Internet--http://www3.ncbi.nlm.nih.gov/entrez (Downloaded Dec. 23, 1997).
Green, et al., "Ancient Conserved Regions in New Gene Sequences and the Protein Databases", Science, v. 259, n. 5102, pp. 1711-1716 (1993).
http://wehih.wehi.edu.au/ (1995).
Waldrop, et al., "On-line Archives Let Biologists Interrogate the Genome", Science, v. 269, n. 5229, pp. 1356-1358 (1995).
No Author, "Incyte Serves Up Information, part I", In Vivo the Business & Medicine Report, p. 32, ISSN: 0258-851X (1996).
Martin, et al., "Accessing Genetics Databases", Database, v. 17, n. 1, p. 51(8) (1994).
Kanehisa, M. "Toward Pathway Engineering: A New Database Old Genetic and Molecular Pathways." Science and Technology Japan, 1995, No. 59, pp. 34-38.
Gaasterland, T. and Sensen, C. "Using Multiple Tools for Automated Genome Interpretation in a Integrated Environment", Trends In Genetics, Jan. 1996.
Adams, M.D. et al. "Complementary DNA Sequencing: Expressed Sequence Tags and Human Genome Project", Science, Jun. 21, 1991, vol. 252, pp. 1651-1656.
International Search Report for PCT/US97/22691 filed Dec. 11, 1997, Dated Aug. 18, 1998.
Berry Stephanie F.
Covitz Peter A.
Heath Joe Don
Klingler Tod M.
Russo Frank D.
Choules Jack M.
Incyte Pharmaceuticals Inc.
LandOfFree
Database and system for storing, comparing and displaying genomi does not yet have a rating. At this time, there are no reviews or comments for this patent.
If you have personal experience with Database and system for storing, comparing and displaying genomi, we encourage you to share that experience with our LandOfFree.com community. Your opinion is very important and Database and system for storing, comparing and displaying genomi will most certainly appreciate the feedback.
Profile ID: LFUS-PAI-O-662561