Organic compounds -- part of the class 532-570 series – Organic compounds – Carbohydrates or derivatives
Patent
1994-11-04
1998-10-20
Kunz, Gary L.
Organic compounds -- part of the class 532-570 series
Organic compounds
Carbohydrates or derivatives
536 245, C07H 1904, C07H 2100, C07H 2102, C07H 2104
Patent
active
058247963
ABSTRACT:
This invention is directed to novel substituted nucleotide bases with a crosslinking arm which accomplish crosslinking between specific sites on adjoining strands of oligonucleotides or oligodeoxynucleotides. The invention is also directed to oligonucleotides comprising at least one of these crosslinking agents and to the use of the resulting novel oligonucleotides for diagnostic and therapeutic purposes. The crosslinking agents of the invention are of the following formula (I'):
REFERENCES:
patent: 3598807 (1971-08-01), Nakayama et al.
patent: 3962211 (1976-06-01), Townsend et al.
patent: 4123610 (1978-10-01), Summerton et al.
patent: 4582789 (1986-04-01), Sheldon et al.
patent: 4599303 (1986-07-01), Yabusaki et al.
patent: 4711955 (1987-12-01), Ward et al.
patent: 4766062 (1988-08-01), Diamond et al.
patent: 4795700 (1989-01-01), Dervan et al.
patent: 4837311 (1989-06-01), Tam et al.
patent: 5176996 (1993-01-01), Hogan et al.
Hobbs, Frank W. Jr. Org. Chem., (1989) 54:3420-3422.
Umlauf, Scott W. et al. J. of Bio. Chem. (1990) 265/28:16898-16912.
Register, James C. III et al. J. of Bio. Chem. (1987) 262/26:12812-12820.
Thoung, Nguyen Thanh et al. Biochimie, (1985) 67:673-684.
Chang, Susanne et al. J. of Bio. Chem. (1988) 263/20:15110-15117.
Knorre, D. G. et al. "complementarily addressed modification of double-stranded DNA in a triple-stranded complex" Dokl. Akad. NAUK SSSR (1988) 300/4:1006-9.
Petrie, Charles T. et al. Bioconjugate Chemistry, (1991) 2/6:441-446.
Sidwell, Robert W. et al. Applied Microbiology, (1968) 16/2:370-392.
Seela, Frank et al. Nucleic Acids Research, (1982) 10/4:1389-1397.
Elsner, Henrik et al. Analytical Biochemistry, (1985) 149/2:575-581.
Sonenberg, Nahum et al. Biochemistry (Proc. Nat'l. Acad. Sci. USA) (1977) 74/10:4288-4292.
Turchinsky, M.F. et al. FEBS Letters (1974) 38/3:304-307.
Gilbson, K. et al. Nucleic Acids Research (1987) 15/16:5455-6467.
Meyer, Rich B. et al. J. Am. Chem. Soc. (1989) 111/22:8517-8519.
Telser, Joshua et al. J. Am. Chem. Soc. (1989) 111/18:7226-7232.
Chemical Abstracts (1980) 92/21:p. 20.
Glass, Robert E. Gene Function: E. coli and its heritable elements, Univ. of Calif. Press (1982) pp. 268-312.
Moser, Heinz E. et al. Research Articles (1987) Oct. 30:645-650.
Hartley, John A. et al. biochemistry (1990) 29/12:2985-2991.
Vlassov, Valentin V. et al. "Sequence-specific chemical modification of double-stranded DNA with alkylating oligodeoxyribonucleotide derivaties" Gene (1988) 72:313-322.
Uhlmann, E. et al. Chemical Rivews (1990) 90/4:544-584.
Moneesh Chatterjee et al. J. Am. Chem. Soc., (1990) 112:6397-6399.
Shaw, Jeng-Pyng et al. J. Am. Chem. Soc., (1991) 113:7765-7766.
Korre, D.G. et al. Chemical Reviews "Oligonucleotide Linked to Reactive Groups", Ed. by J. Cohen, Chapter 8, CRC Press, Inc., (1989) pp. 173-196.
John, Rainer et al. Chem. Ber. (1990) 123:133-136.
Orson, Frank M. Nucleic Acids Research, (1991) 19/12:3435-3441.
Gamper et al. Nucl. Acids Res. 14: 9943, 1986.
Robins et al., J. Can, J. Chem., 60:554 (1982).
Robins et al., J. Org. Chem., 48:1854 (1983).
Dale et al., Proc. Natl. Acad. Sci, USA, 70:2238 (1973).
Dale et al., Biochemistry, 14:2447 (1975).
Ruth et al., J. Org. Chem., 43:2870 (1978).
Bergstrom et al., J. Am. Chem. Soc., 100:8106 (1978).
Bigge et al., J. Am. Chem. Soc., 102:2033 (1980).
Kobayashi, Chem. Pharm. Bull., 21:941 (1973).
B.R. Baker, "Design of Active-Site-Directed Irreversible Enzyme Inhibitors," John Wiley and Sons Inc., New York, (1967).
Summerton and Bartlett, J. Mol. Biol., 122:145 (1978).
Webb and Matteucci, Nucleic Acids Res., 14:7661 (1986).
Iverson and Dervan, Proc. Natl. Acad. Sci. USA, 85:4615 (1988).
Green et al., Ann Rev. Biochem., 55:569 (1986).
Paterson et al., Proc. Natl. Acad. Sci., 74:4370 (1977).
Hastie et al., Proc. Natl. Acad. Sci., 75:1217 (1978).
Zamecnik and Stephenson, Proc. Natl. Acad. Sci., 75:280 (1978).
Stephenson et al., Proc. Natl. Acad. Sci. USA, 75:285 (1978).
Zamecnik et al., Proc. Natl. Acad. Sci. USA, 83:4143 (1986).
Blake et al., Biochemistry, 24:6139 (1985).
Gamper et al., Natl. Acids Res., 14:9943 (1986).
Le Doan et al., Nucleic Acids Res., 15:7749 (1987).
Sonveaux, Bioorganic Chemistry, 14:274 (1986).
Jones, in "Oligonucleotide Synthesis, a Practical Approach", M. J. Gait, Ed., IRL Press, pp. 23-34 (1984).
Langer et al., Proc. Natl. Acad. Sci. USA, 78:6633 (1981).
Arrand, "Preparation of Nucleic Acid Probes" in Nucleic Acid Hybridisation, A Practical Approach, Hames and Higgins, Eds., IRL Press, pp. 17-45 (1985).
Pardue, "In Situ Hybridisation" in Nucleic Acid Hybridisation, A Practical Approach, Hames and Higgins, Eds. IRL Press, pp. 179-202 (1985).
Gall and Pardue, Proc. Natl. Acad. Sci., USA, 63:378 (1969).
John et al., Nature, 223:582 (1969).
"Physical Biochemistry", Freifelder, D., W.H. Freeman & Co., pp. 537-542 (1982).
Tijssen, P., "Practice and Theory of Enzyme Immunoassays, Laboratory Techniques" in Biochemistry and Molecular Biology, Burdon, R.H. van Knippenberg, P.H. Eds., Elsevier, pp. 9-20 (1985).
Sinha et al., Nucleic Acids Res., 12:4539 (1984).
Maxam et al., Proc. Natl. Acad. Sci. USA, 74:560 (1977).
Busso, Mariano; et al: "Nucleotide Dimers Suppress HIV Expression In Vitro" in: Aids Research and Human Retroviruses, vol. 4, No. 6, 1988.
Seela et al. (I), Helv. Chim, Acta, 71, 1813-1823 (1988).
Seela et al. (II), Helv. Chim, Acta, 71, 1191-1198 (1988).
Seela et al. (III), Nucleic Acids Research, 14, 1825-1844 (1986).
Hecht et al. Biochemistry, 15, 1005-1015 (1976).
Fieser et al., Reagents for Organic Synthesis, John Wiley and Sons, New York, New York, 1967, vol. 1, p. 837.
Kochetkov et al., Organic Chemistry of Nucleic Acids, Part B, Plenum Press, New York, New York, 1972, p. 375.
Sinha et al. Nucleic Acids Research, 16(6), 2659-2669 (1988).
Hurst Gerald D.
Meyer Rich B.
Petrie Charles R.
Tabone John C.
Epoch Pharmaceuticals, Inc.
Kunz Gary L.
LandOfFree
Cross-linking oligonucleotides does not yet have a rating. At this time, there are no reviews or comments for this patent.
If you have personal experience with Cross-linking oligonucleotides, we encourage you to share that experience with our LandOfFree.com community. Your opinion is very important and Cross-linking oligonucleotides will most certainly appreciate the feedback.
Profile ID: LFUS-PAI-O-245513