Computer methods and systems for displaying information...

Data processing: measuring – calibrating – or testing – Measurement system in a specific environment – Biological or biochemical

Reexamination Certificate

Rate now

  [ 0.00 ] – not rated yet Voters 0   Comments 0

Details

C435S004000, C435S006120, C702S020000, C703S011000

Reexamination Certificate

active

07031843

ABSTRACT:
The invention described herein relates to computer and display methods and systems for acquiring, storing, manipulating, analyzing, linking, retrieving and displaying the data. The methods and systems are illustrated with reference to data on constituents of biological systems, particularly data on gene expression. In this regard, the invention especially relates to interactive systems for displaying gene expression-related data in three-dimensional molecular topographies. Expressed genes and their activity are represented as peaks in the topographies. Additionally, the invention relates to methods and systems for generating and displaying delta plots, which show differences in gene expression, and to methods and systems for generating molecular movies that show changes in gene expression. While illustrated by reference to gene expression, the methods and systems can be used to generate and manipulate displays of data on other complex populations.

REFERENCES:
patent: 5599672 (1997-02-01), Liang et al.
patent: 5811231 (1998-09-01), Farr et al.
patent: WO 97/05286 (1997-02-01), None
Sogawa et al., Proceedings of the National Academy of Sciences, USA., vol. 83, pp. 8044-8048, 1986.
Rushmore et al., Proceedings of the National Academy of Sciences, USA., vol. 87, pp. 3826-3860, 1990.
de Groot et al., EMBO Journal, vol. 10, pp. 2523-2532, 1991.
Stoeckert, Jr. et al., Nature Genetics, 32 (Suppl.), pp. 469-473, 2002.
Yershov et al. “DNA Analysis and Diagnostics on Oligonucleotide Microchips”, Proc. Natl. Acad. Sci. USA (May 1996), vol. 93, pp. 4913-4918.
Sogawa et al. “Location of Regulatory Elements Responsible for Drug Induction in the Rat Cytochrome P-450 Gene”, Biochemistry (Nov. 1985), vol. 83, pp. 8044-8048.
Rushmore et al. “Regulation of glutathione S-transferase Ya subunit gene expression: Identification of a unique xenobiotic-responsive element controlling inducible expression by planar aromatic compounds”, Proc. Natl. Acad. Sci. USA (May 1990), vol. 87, pp. 3826-3830.
de Groot, et al. “Characterization of the mouse junD promoter—high basal level activity due to an octamer motif”, The EMBO Journal (1991), vol. 10, pp. 2523-2532.
Sockert Jr., et al. “Microarray databases: standards and ontologies”, Nature Genetics suppliment, vol. 32., (Dec. 2002), pp. 469-473.
Lockhart, David J., et al., “Expression monitoring by hybridzation to high-density oligonucleotide arrays”,Nature Biotechnology, vol. 14, No. 13, Dec. 14, 1996, pp 1675-1680.
Liang, Peng, et al., “Differential Display of Eukaryotic Messenger RNA by Means of the Polymerase Chain Reaction”,Science, vol. 257, Aug. 14, 1992, pp. 967-971.
Spinardi , Laura, et al., “Protocols for an improved detection of point mutations by SSCP”,Nucleic Acids Research, vol. 19, No. 14, Jul. 25, 1991, p. 4009.
McClelland, Michael, et al., “RNA fingerprinting and differential display using arbitrarily primed pCR”,Trends in Genetics, vol. 11, No. 6, Jun. 1995. pp. 242-246.
Leuhrsen, Kenneth R., et al., “Analysis of Differential Display RT-PCR Products Using Fluorescent Primers and GENESCAN™ Software”,BioTechniques, vol. 22, No. 1, Jan. 1997, pp. 168-174.
Jones, Susan W., et al., “Generation of Multiple mRNA Fingerprints Using Fluorescence-Based Differential Display and an Automated DNA Sequence”,BioTechniques, vol. 22, No. 3, Mar. 1997, pp. 536-543.
Lang, Perg, et al. “Differentia display using one-base anchored oligoed T primers”,Nucleic Acids Research, vol. 22, No. 25, Dec. 25, 1994, pp 5763-5764.
Ito, Takashi, et al , “Fluorescent differential display arbitrarily primed RT-PCT fingerprinting on an automated DNA sequencer”,FEBS Letters, vol. 351, No. 2, Sep. 5, 1994. pp. 231-236.

LandOfFree

Say what you really think

Search LandOfFree.com for the USA inventors and patents. Rate them and share your experience with other people.

Rating

Computer methods and systems for displaying information... does not yet have a rating. At this time, there are no reviews or comments for this patent.

If you have personal experience with Computer methods and systems for displaying information..., we encourage you to share that experience with our LandOfFree.com community. Your opinion is very important and Computer methods and systems for displaying information... will most certainly appreciate the feedback.

Rate now

     

Profile ID: LFUS-PAI-O-3602440

  Search
All data on this website is collected from public sources. Our data reflects the most accurate information available at the time of publication.