Computer-implemented biological sequence identifier system...

Data processing: database and file management or data structures – Database and file access – Preparing data for information retrieval

Reexamination Certificate

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C702S020000, C703S002000, C703S011000, C706S048000, C707S706000, C707S723000, C707S776000

Reexamination Certificate

active

07979446

ABSTRACT:
A method of: submitting reference sequences to a taxonomic database to produce taxonomic results; and reporting a taxonomic identification based on the taxonomic results. The reference sequences are the output of genetic database queries that return a score for each reference sequence. A method for processing a biological sequence obtained from an assay by: converting base calls located in a predetermined list of positions within the biological sequence to N; and determining the ratio of single nucleotide polymorphisms in the biological sequence relative to a reference sequence. Each entry in the predetermined list of positions represents the capability of a substance hybridizing to a microarray used to generate the biological sequence. The substance is not the nucleic acid of a target pathogen.

REFERENCES:
patent: 2002/0015955 (2002-02-01), Meyerson
Examination report in NZ564992.
Office Action in KR Appl No. 10-2008-7001309.
Written Opinion in SG200718668-7 (Feb. 25, 2010).
Office Action in JP2008-516959 (Dec. 14, 2010).
Goto et al., “Accurate and Rapid Identification Technique for Microorganisms by Homology Search” Fragrance Journal C, 31(3), 62-71 (2003) (Japanese), English abstract only.
Goto et al., “Accurate and Rapid Identification Technique for Microorganisms by Homology Search” Fragrance Journal C, 31(3), 62-71 (2003) (Partial translation).

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