Data processing: database and file management or data structures – Database and file access – Preparing data for information retrieval
Reexamination Certificate
2011-06-21
2011-06-21
Smith, Carolyn L. (Department: 1631)
Data processing: database and file management or data structures
Database and file access
Preparing data for information retrieval
C435S006120, C536S023100, C702S020000, C703S011000, C706S013000
Reexamination Certificate
active
07966338
ABSTRACT:
The present invention outlines a novel approach to utilizing the results of genomic sequence information by computer-directed polynucleotide assembly based upon information available in databases such as the human genome database. Specifically, the present invention may be used to select, synthesize and assemble a novel, synthetic target polynucleotide sequence encoding a target polypeptide. The target polynucleotide may encode a target polypeptide that exhibits enhanced or altered biological activity as compared to a model polypeptide encoded by a natural (wild-type) or model polynucleotide sequence.
REFERENCES:
patent: 5143854 (1992-09-01), Pirrung et al.
patent: 5198346 (1993-03-01), Ladner et al.
patent: 5663046 (1997-09-01), Baldwin et al.
patent: 5686242 (1997-11-01), Bruice et al.
patent: 5714320 (1998-02-01), Kool
patent: 5716780 (1998-02-01), Edwards et al.
patent: 5733743 (1998-03-01), Johnson et al.
patent: 5738996 (1998-04-01), Hodges et al.
patent: 5747334 (1998-05-01), Kay et al.
patent: 5759799 (1998-06-01), Grosso
patent: 5770358 (1998-06-01), Dower et al.
patent: 5783384 (1998-07-01), Verdine
patent: 5789162 (1998-08-01), Dower et al.
patent: 5804563 (1998-09-01), Still
patent: 5807683 (1998-09-01), Brenner
patent: 5807754 (1998-09-01), Zambias et al.
patent: 6136269 (2000-10-01), Winkler et al.
patent: 0 108787 (1984-05-01), None
patent: 0 316 018 (1989-05-01), None
patent: 0 385 410 (1996-10-01), None
patent: WO 89/10977 (1989-11-01), None
patent: WO 90/00626 (1990-01-01), None
patent: WO 92/10092 (1992-06-01), None
patent: WO 94/12632 (1994-06-01), None
patent: WO 99/14318 (1999-03-01), None
patent: WO 99/053101 (1999-10-01), None
patent: WO 00/42560 (2000-07-01), None
patent: WO 00/42561 (2000-07-01), None
patent: WO 00/49142 (2000-08-01), None
Gelfand et al., “Gene recognition via spliced sequence alignment”, 1996, Proceedings of the National Academy of Sciences USA, vol. 93, pp. 9061-9066.
“parse” definition, 2009, Merriam-Webster online dictionary, on the world wide web at http://www.merriam-webster.com/dictionary/parse[1], 2 pages.
P.T. Gilham, “The Synthesis of Celluloses Containing Covalently Bound Nucleotides, Polynucleotides, and Nucleic Acids,”Biochemistry, 7: 2809-2813 (1968).
Fodor, et al., “Light-Directed, Spatially Addressable Parallel Chemical Synthesis,”Science, 251: 767-777 (1991).
Kleppe, et al., “Studies on Polynucleotides XCVI. Repair Replication of Short Synthetic DNA's as catalyzed by DNA Polymerases,”Journal of Molecular Biology, 56: 341-361 (1971).
Geysen, et al., “Strategies for Epitope analysis using peptide synthesis,”Journal of Immunological Methods, 102: 259-274 (1987).
Wolf, et al., “Rapid hybridization kinetics of DNA attached to submicron latex particles,”Nucleic Acids Research, 15(7): 2911-2926 (1987).
Lund, et al., “Assessment of methods for covalent binding of nucleic acids to magnetic beads, Dynabeads™, and the characteristics of bound nucleic acids in hybridization reactions,”Nucleic Acids Research, 6(22): 10861-10880 (1988).
Newton, et al., Analysis of any point mutation in DNA. The amplification refractory mutation system (ARMS),Nucleic Acids Research, 17(7): 2503-2516 (1989).
Mizutani, et al., “Oligo(dT)-glyceryl porous glass, a better support for the preparation of mRNA,”Journal of Chromatography, 356: 202-205 (1986).
Supplemental European Search Report dated Jun. 9, 2006.
Edge, et al., “Total synthesis of a human leukocyte interferon gene,” Nature, 292: 756-762 (1981).
Dombrowski, et al., “Construction of a multiple mucin tandem repeat with a mutation in the tumor-specific epitope by a solid-phase gene assembly protocol,” Nucleic Acids Research, 20(24): 6743-6744 (1992).
Baumeister Kirk
Johnson & Johnson
Smith Carolyn L.
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