Data processing: measuring – calibrating – or testing – Measurement system in a specific environment – Biological or biochemical
Reexamination Certificate
2006-06-20
2006-06-20
Brusca, John S. (Department: 1631)
Data processing: measuring, calibrating, or testing
Measurement system in a specific environment
Biological or biochemical
C700S001000, C707S793000
Reexamination Certificate
active
07065451
ABSTRACT:
The invention relates to computer-based systems and methods for the design, comparison and analysis of genetic and proteomic databases. In a particular embodiment, the recited systems and methods have been implemented in a computer tool called ARROGANT. ARROGANT, in the analysis mode, is a comprehensive tool for providing annotation to large gene and protein collections. ARROGANT takes in a large collection of sequence identifiers and associates it with other information collected from many sources like sequence annotations, pathways, homology, polymorphisms, artifacts, etc. The simultaneous annotation for a large assembly of genes makes the collection of genomic/EST sequences truly informative.
REFERENCES:
patent: 5571639 (1996-11-01), Hubbell et al.
patent: 5940825 (1999-08-01), Castelli et al.
patent: 6221600 (2001-04-01), MacLeod et al.
patent: 6303297 (2001-10-01), Lincoln et al.
patent: 6355450 (2002-03-01), Fleischmann et al.
patent: 6421613 (2002-07-01), Nadimpalli et al.
patent: 6470277 (2002-10-01), Chin et al.
patent: 6472173 (2002-10-01), Ford et al.
patent: 6500938 (2002-12-01), Au-Young et al.
patent: 6553317 (2003-04-01), Lincoln et al.
patent: 2002/0081603 (2002-06-01), Wolffe et al.
patent: 2002/0194173 (2002-12-01), Bjornson et al.
patent: 2003/0082572 (2003-05-01), Spier et al.
Hennig et al, A data-analysis pipeline for large-scale gene expression enalysis, 2000, ACM, pp. 165-173.
King et al., Genome sacle prediction of protein functional class from sequence using data mining, 2000, ACM, pp. 384-389.
Wang et al., Combinatorial pattern discovery for scientific data: Some preliminary results, May 1994, ACM, pp. 115-125.
thomsonhc.com/pdrel/librarian/PFDefaultActionld/pdrcommon.Stedmans, Stedman's Medical Dictionary 27th Edition website, searching term “syngeneic” downloaded Aug. 11, 2005.
Kulkarni et al. ARROGANT: an application to manipulate large gene collections. Bioinformatics vol. 18, No. 11, pp. 1410-1417 (2002).
Garner Harold R.
Kulkarni Amit
Board of Regents , The University of Texas System
Brusca John S.
Osman Richard Aron
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