Compositions for the detection of enzyme activity in...

Chemistry: molecular biology and microbiology – Measuring or testing process involving enzymes or... – Involving antigen-antibody binding – specific binding protein...

Reexamination Certificate

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C530S300000, C530S324000, C530S326000, C514S002600, C514S013800, C435S023000, C435S024000

Reexamination Certificate

active

07879574

ABSTRACT:
The present invention provides for novel reagents whose fluorescence increases in the presence of particular proteases. The reagents comprise a characteristically folded peptide backbone conjugated to two fluorophores such that the fluorophores are located opposite sides of a cleavage site. When the folded peptide is cleaved, as by digestion with a protease, the fluorophores provide a high intensity fluorescent signal at a visible wavelength. Because of their high specificity and their high fluorescence signal in the visible wavelengths, these protease indicators are particularly well suited for detection of protease activity in biological samples, in particular in frozen tissue sections. Thus this invention also provides for methods of detecting protease activity in situ in frozen sections.

REFERENCES:
patent: 4557862 (1985-12-01), Mangel et al.
patent: 4648893 (1987-03-01), Roux
patent: 4708929 (1987-11-01), Henderson
patent: 4780421 (1988-10-01), Kameda et al.
patent: 4897444 (1990-01-01), Byrnes et al.
patent: 5011910 (1991-04-01), Marshall et al.
patent: 5110801 (1992-05-01), Leveen et al.
patent: 5118801 (1992-06-01), Lizardi et al.
patent: 5212298 (1993-05-01), Rademacher et al.
patent: 5312728 (1994-05-01), Lizardi et al.
patent: 5506115 (1996-04-01), Toth et al.
patent: 5539082 (1996-07-01), Nielsen et al.
patent: 5605809 (1997-02-01), Komoriya et al.
patent: 5652107 (1997-07-01), Lizardi et al.
patent: 5681821 (1997-10-01), Powers et al.
patent: 5698411 (1997-12-01), Lucas et al.
patent: 5714342 (1998-02-01), Komoriya et al.
patent: 5714392 (1998-02-01), Dawson et al.
patent: 5723288 (1998-03-01), Dykstra et al.
patent: 5733719 (1998-03-01), Jaffe et al.
patent: 5759773 (1998-06-01), Tyagi et al.
patent: 5776720 (1998-07-01), Jaffe et al.
patent: 5804395 (1998-09-01), Schade et al.
patent: 5807674 (1998-09-01), Tyagi
patent: 5871946 (1999-02-01), Lucas et al.
patent: 5912137 (1999-06-01), Tsien et al.
patent: 5925517 (1999-07-01), Tyagi et al.
patent: 5925558 (1999-07-01), Tsien et al.
patent: 5998204 (1999-12-01), Tsien et al.
patent: 6037130 (2000-03-01), Tyagi et al.
patent: 6037137 (2000-03-01), Komoriya et al.
patent: 6103476 (2000-08-01), Tyagi et al.
patent: 6130476 (2000-10-01), LaFontaine, Jr. et al.
patent: 6150097 (2000-11-01), Tyagi et al.
patent: 6410255 (2002-06-01), Pollok et al.
patent: 6893868 (2005-05-01), Packard et al.
patent: 6936687 (2005-08-01), Komoriya et al.
patent: 7312302 (2007-12-01), Packard et al.
patent: 7541143 (2009-06-01), Packard et al.
patent: 0 242 095 (1987-10-01), None
patent: WO 96/13607 (1996-05-01), None
patent: WO 97/39008 (1997-10-01), None
patent: WO 98/10096 (1998-03-01), None
patent: WO 98/37226 (1998-08-01), None
patent: WO 00/06778 (2000-02-01), None
patent: WO 00/71562 (2000-11-01), None
patent: WO 00/71740 (2000-11-01), None
patent: WO 01/18238 (2001-03-01), None
patent: WO 01/31062 (2001-05-01), None
patent: WO 02/061038 (2002-08-01), None
US Patent Application filed Apr. 10, 2009 assigned U.S. Appl. No. 12/422,127, Packard et al.
US Office Action dated Jun. 12, 1998 issued in U.S. Appl. No. 08/802,981 (6,037,137).
US Office Action Final dated Mar. 9, 1999 issued in U.S. Appl. No. 08/802,981 (6,037,137).
US Notice of Allowance dated Sep. 24, 1999 issued in U.S. Appl. No. 08/802,981 (6,037,137).
US Office Action dated Sep. 10, 2002 issued in U.S. Appl. No. 09/394,019 (6,936,687).
US Office Action Final dated Jul. 7, 2003 issued in U.S. Appl. No. 09/394,019 (6,936,687).
US Office Action dated Jun. 28, 2004 issued in U.S. Appl. No. 09/394,019 (6,936,687).
US Notice of Allowance dated Mar. 7, 2005 issued in U.S. Appl. No. 09/394,019 (6,936,687).
US Office Action dated Feb. 6, 2004 issued in U.S. Appl. No. 09/747,287 (6,893,868).
US Notice of Allowance dated Nov. 1, 2004 issued in U.S. Appl. No. 09/747,287 (6,893,868).
US Office Action (Restriction Requirement) dated Feb. 23, 2006 issued in U.S. Appl. No. 11/015,864 (7,541,143).
US Office Action dated Sep. 6, 2006 issued in U.S. Appl. No. 11/015,864 (7,541,143).
US Office Action dated May 25, 2007 issued in U.S. Appl. No. 11/015,864 (7,541,143).
US Office Action (Ex Parte Quayle Action) dated Feb. 13, 2008 issued in U.S. Appl. No. 11/015,864 (7,541,143).
US Office Action (Ex Parte Quayle Action) dated Jul. 17, 2008 issued in U.S. Appl. No. 11/015,864 (7,541,143).
US Notice of Allowance dated Jan. 5, 2009 issued in U.S. Appl. No. 11/015,864 (7,541,143).
US Office Action dated Aug. 5, 2005 issued in U.S. Appl. No. 09/874,350 (7,312,302).
US Office Action dated Apr. 18, 2006 issued in U.S. Appl. No. 09/874,350 (7,312,302).
US Office Action dated Jan. 22, 2007 issued in U.S. Appl. No. 09/874,350 (7,312,302).
US Notice of Allowance dated Aug. 3, 2007 issued in U.S. Appl. No. 09/874,350 (7,312,302).
PCT International Search Report dated Jun. 2, 1998 issued in PCT/US98/03000.
PCT International Preliminary Examination Report dated Jan. 7, 1999 issued in PCT/US98/03000.
PCT International Search Report dated Jan. 29, 2001 issued in PCT/US00/24882.
PCT Written Opinion dated Jul. 12, 2001 issued in PCT/US00/24882.
PCT International Search Report dated Sep. 3, 2002 issued in PCT/US01/49781.
PCT Written Opinion dated Dec. 3, 2002 issued in PCT/US01/49781.
PCT International Preliminary Examination Report dated Apr. 6, 2003 issued in PCT/US01/49781.
AU Examiner's First Report dated Jul. 7, 2000 issued in 66567/98.
EP Partial European Search Report dated Dec. 16, 2002 issued in 98 908564.2-2110.
EP Supplementary European Search Report dated Mar. 11, 2003 issued in 98 908564.2.
EP Examination Report dated May 4, 2004 issued in 98 908564.2.
EP Examination Report dated Sep. 19, 2005 issued in 98 908564.2.
EP Examination Report dated Feb. 15, 2007 issued in 98 908564.2.
AU Examiner's First Report dated Apr. 23, 2004 issued in 73688/00.
EP Supplementary Partial European Search Report dated Apr. 13, 2006 issued in 01998079.6-2404.
EP Supplementary European Search Report dated Jun. 29, 2006 issued in 01998079.6-2404.
Bernacchi and Mely (2001) “Exciton interaction in molecular beacons: a sensitive sensor for short range modifications of the nucleic acid structure”Nucleic Acids Res.29(13):e62, 8 pages.
Carmel et al., (Feb. 1973) “Use of Substrates with Fluorescent Donor and Acceptor Chromophores for the Kinetic Assay of Hydrolases”FEBS Letters30(1):11-14.
Ekert et al. (1999) “Inhibition of Apoptosis and Clonogenic Survival of Cells Expressing crmA Variants: Optimal Caspase Substrates are Not Necessarily Optimal Inhibitors”EMBO Jol. 18(2):330-338.
Finucane et al. (Jan. 22, 1999)“Bax-Induced Caspase Activation and Apoptosis via CytochromecRelease from Mitochondria Is Inhibitable by Bcl-xL*”Abstract J Biol Chem, 274(4):2225-2233 (17 pages).
Harvey et al. (Jan. 10, 2000) “Caspase-dependent Cdk Activity Is a Requisite Effector of Apoptotic Death Events”J. of Cell Biol. 148(1):59-72.
Hirata et al. (Feb. 16, 1998) “Caspases Are Activated in a Branched Protease Cascade and Control Distinct Downstream Processes in Fas-Induced Apoptosis”J. of Exp. Med. 187(4):587-600.
Holland et al. (1991) “Detection of specific polymerase chain reaction product by utilizing the 5′-3′ exonuclease activity ofThermus aquaticusDNA polymerase”PNAS USA88:7276-7280.
Isaac et al. (1995) “Use of Fluorescence Resonance Energy Transfer to Estimate Intramolecular Distances in the Msx-1 Homcodomain”Biochemistry34(46):15276-15281.
Kanuka et al. (Jan. 1999) “Proapoptotic activity ofCaenorhabditis elegansCED-4 protein inDrosophila: Implicated mechanisms for caspase activation”Proc. Natl. Acad. Sci. USA 96:145-150.
Keller et al. (1996) “Mode of Insertion of the Signal Sequence of a Bacterial Precursor Protein into Phospholipid Bilayers As Revealed by Cysteine-Based Site-Directed Spectroscopy”Biochemistry35(9):3063-3071.
Knight et al., (Jan. 1992) “A novel coumarin-labelled peptide for sensitive continuous assays of the matrix metalloproteinases”FEBS Letters, 296(3):263-26

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