Compositions and methods for the identification, assessment,...

Chemistry: molecular biology and microbiology – Measuring or testing process involving enzymes or...

Reexamination Certificate

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C435S006120, C435S007100, C530S300000, C530S350000, C536S023500

Reexamination Certificate

active

08080368

ABSTRACT:
The present invention is directed to the identification of markers that can be used to determine whether tumors are sensitive or resistant to a therapeutic agent. The present invention is also directed to the identification of therapeutic targets. The invention features a number of “sensitivity markers.” These are markers that are expressed in most or all cell lines that are sensitive to treatment with an agent and which are not expressed (or are expressed at a rather low level) in cells that are resistant to treatment with that agent. The invention also features a number of “resistance markers.” These are markers that are expressed in most or all cell lines that are resistant to treatment with an agent and which are not expressed (or are expressed at a rather low level) in cells that are sensitive to treatment with that agent. The invention also features marker sets that can predict patients that are likely to respond or not to respond to an agent.

REFERENCES:
patent: 7338758 (2008-03-01), Clark et al.
patent: 2003/0143552 (2003-07-01), Clark et al.
Bonaldo et al., “Normalization and subtraction: two approaches to facilitate gene discovery”,Genome Res., 6:791-806 (1996).
Hartley et al., “DNA cloning using in vitro site-specific recombination”,Genome Res., 10:1788-1795 (2000).
Nagase et al., “Prediction of the coding sequences of unidentified human genes. Xx. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro”,DNA Research, 8:85-95 (2001).
Simpson et al., “Systematic subcellular localization of novel proteins identified by large-scale cDNA sequencing”,EMBO Reports, 11(31):287-292 (2000).
Wiemann et al., “Toward a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs”,Genome Res., 11:422-435 (2001).

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