Compositions and methods for making mutations in cell lines...

Chemistry: molecular biology and microbiology – Process of mutation – cell fusion – or genetic modification

Reexamination Certificate

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C435S455000, C435S441000, C435S446000, C536S023100

Reexamination Certificate

active

07972853

ABSTRACT:
The present invention is directed generally to reduction or inactivation of gene function or gene expression in cells in vitro and in multicellular organisms. The invention encompasses methods for mutating cells using a combination of mutagens, particularly wherein at least one mutagen is an insertional mutagen, to achieve homozygous gene mutation or mutation of multiple genes required cumulatively to achieve a phenotype to create knock-outs, knock-downs, and other modifications in the same cell. The invention is also directed to cells (and libraries thereof) and organisms created by the methods of the invention, including those in which at least one of the genes created by insertional mutagenesis is tagged by means of the insertion sequences thereby allowing identification of the mutated gene(s). The invention is also directed to libraries of mutated cells and their uses. The invention is also directed to methods of identifying mutations with methods of the invention, in cells (and libraries thereof) and organisms, by means of the insertional tag.

REFERENCES:
patent: 6436707 (2002-08-01), Zambrowicz et al.
patent: 6835867 (2004-12-01), Woychik et al.
patent: 2003/0143578 (2003-07-01), Pruitt et al.
patent: WO 96/39803 (1996-12-01), None
deWeese, T.L. et al. Mouse Embryonic Stem Cells Carrying One or Two Defective Msh2 Alleles Respond Abnormally to Oxidative Stress Inflicted by Low-level Radiation, PNAS 95:11915-11920, 1998.
deWind, N. et al. Inactivation of the Mouse Msh2 Gene Results in Mismatch Repair Deficiency, Methylation Tolerance, Hyperrecombination, and Predisposition to Cancer, Cell 82:321-330, 1995.
Amsterdam, A. et al. “A large-scale insertional mutagenesis screen in zebrafish,”Genes&Development13:2713-2724 (1999).
Brown, S.D.M. et al. “Mouse mutagenesis—systematic studies of mammalian gene function,”Human Molecular Genetics7(10):1627-33.
Chen, Y. et al. “Genotype-based screen of ENU-induced mutations in mouse embryonic stem cells”Nat. Genet. 24(3):314-7 (2000).
Friedberg, E.C et al. “Chapter 2: Introduction to Mutagenesis” inDNA Repair and Mutagenesis, pp. 59-90, ASM Press, Washington, D.C. (1995).
Friedberg, E.C et al. “Chapter 11: Mutagenesis in Prokaryotes” inDNA Repair and Mutagenesis, pp. 465-522, ASM Press, Washington, D.C. (1995).
Friedberg, E.C et al. “Chapter 12: DNA Damage Tolerance and Mutagenesis in Eukaryotic Cells” inDNA Repair and Mutagenesis, pp. 523-592, ASM Press, Washington, D.C. (1995).
Gogos, J.A. et al. “Selection for retroviral insertions into regulated genes”Journal of Virology71(2):1644-50 (1997).
Hartwell, L.H. et al. “Integrating genetic approaches into the discovery of anticancer drugs”Science278:1064-1068 (1997).
Rodriguez, C.I. et al. “High-efficiency deleter mice show that FLPe is an alternative to Cre-loxP” Nat. Genet. 25(2):139-40 (2000).
Soriano, P. et al. “Targeted disruption of the c-srcproto-oncogene leads to osteopetrosis in mice”Cell64:693-702 (1991).
Stark, G.R. et al. “Forward genetics in mammalian cells: functional approaches to gene discovery”Human Molecular Genetics8(10):1925-38 (1999).
te Riele, H. et al. “Consecutive inactivation of both alleles of thepim-1proto-oncogene by homologous recombination in embryonic stem cells”Nature348:649-651 (1990).
Voss, A.K. et al. “Efficiency assessment of the gene trap approach”Developmental Dynamics212:171-180 (1998).
Cooley, Lynn et al., “Inertional Mutagenesis of theDrosophilaGenome with Single P Elements”Science, 239(4844):1121-1128, 1988.
Bier, E., et al., “Searching for pattern and mutation in theDrosophilagenome with a P- lacZ vector,”Genes&Development, vol. 3:1273-1287 (1989).
Boeck, Ronald, et al., “Capped mRNA Degradation Intermediates Accumulate in the Yeastspb8-2Mutant,”Molecular and Cellular Biology, vol. 18(9):5062-5072 (1998).
Gaiano, Nicholas, et al., “Insertional mutagenesis and rapid cloning of essential genes in zebrafish,”Nature, vol. 383:829-832 (1996).
Gaiano, Nicholas, et al., “Highly efficient germ-line transmission of proviral insertions in zebrafish,”Proc. Natl. Acad. Sci., vol. 93:7777-7782 (1996).
Harrington, John J., et al., “Creation of genome-wide protein expression libraries using random activation of gene expression,”Nature Biotechnology, vol. 19:440-445 (2001).
Ibañez, Ester, et al., “Role of theyiaRandyiaSGenes ofEscherichia coliin Metabolism of Endogenously Formed L-Xylulose,”Journal of Bacteriology, vol. 182(16):4625-4627 (2000).
Krysan, Patrick J., et al., “T-DNA as an Insertional Mutagen in Arabidopsis,”The Plant Cell, vol. 11:2283-2290 (1999).
Lee, Myeong S., et al., “Construction and Analysis of a Library for Random Insertional Mutagenesis inStreptococcus pneumoniae: Use for Recovery of Mutants Defective in Genetic Transformation and for Identification of Essential Genes,”Applied and Environmental Microbiology, vol. 65(5):1883-1890 (1999).
Lobel, Leslie I, et al., “Construction of mutants of Moloney murine leukemia virus by suppressor-linker insertional mutagenesis: Positions of viable insertion mutations,”Proc. Natl. Acad. Sci., vol. 81:4149-4153 (1984).
Morrison, Paul T., et al., “Molecular Analysis of theEscherichia coli recOGene,”Journal of Bacteriology, vol. 171(7):3641-3649 (1989).
Morton, Daniel J., et al., “Effect of Multiple Mutations in the Hemoglobin- and Hemoglobin-Haptoglobin-Binding Proteins, HgpA, HgpB, and HgpC, ofHaemophilus influenzaeType b,”Infection and Immunity, vol. 67(6):2729-2739 (1999).
Ponce, Elizabeth, et al., “Cloning of the Two Pyruvate Kinase Isoenzyme Structural Genes fromEscherichia coli: the Relative Roles of These Enzymes in Pyruvate Biosynthesis,”Journal of Bacteriology, vol. 177(19):5719-5722 (1995).
Ueguchi, Chiharu, et al., “A Study of the Double Mutation ofdnaJandcbpA, Whose Gene Products Function as Molecular Chaperones inEscherichia coli,” Journal of Bacteriology, vol. 177(13):3894-3896 (1995).
European Search Report Application No. 02776253.3-2406, dated Jan. 16, 2006.

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