Chemistry: molecular biology and microbiology – Measuring or testing process involving enzymes or... – Involving nucleic acid
Reexamination Certificate
2005-04-08
2010-06-29
Moran, Marjorie (Department: 1631)
Chemistry: molecular biology and microbiology
Measuring or testing process involving enzymes or...
Involving nucleic acid
C506S007000, C977S791000, C977S795000
Reexamination Certificate
active
07745118
ABSTRACT:
The present invention is an improved method of resequencing DNA using microarrays to rapidly map and identify SNPs, deletions and amplification events present in the genome of an organism. The method is performed by hybridizing a reference and a test genome to two separate arrays with each array exhibiting a specific intensity pattern. The intensity differences between the reference and the test genome arrays are used to produce a mutation map. The mapped differences are resequenced on a set of resequencing arrays to identify specific genetic mutations.
REFERENCES:
patent: 5143854 (1992-09-01), Pirrung et al.
patent: 6375903 (2002-04-01), Cerrina et al.
patent: 6376191 (2002-04-01), Yu et al.
patent: 7144699 (2006-12-01), Chee
Hacia, J.G., “Resequencing and mutational analysis using oligonucleotide microarrays,” Nature Genetics Supplement 21:42-47 (1999).
Saiki, R.K., et al., “Genetic analysis of amplified DNA with immobilized sequence-specific oligonucletoide probes,” Proc. Natl. Acad. Sci. USA 86:6230-6234 (1989).
Albert, T., et al., “High-throughput prokaryotic and viral mapping and resequencing using custom . . . ,” Abstract, Society for General Microbiology 154th Meeting Apr. 2, 2004.
Stjepandic, D., et al., “The genome structure ofPseudomonas putida: high-resolution mapping and microarray analysis,” Environmental Microbiology 4:819-823 (2002).
Tsolaki, A.G., et al., “Functional and evolutionary genomics of Mycobacterium tuberculosis: Insights from genomic deletions in 100 strains,” PNAS 14:4865-4870 (2004).
Wolfgang, M.C., et al., “Conservation of genome content and virulence determinants among clinical and environmental isolates . . . ,” PNAS 14:8484-8489 (2003).
Wong, C.W., et al., “Tracking the Evolution of the SARS Coronavirus using High-Throughput, High-Density Resequencing . . . ,” Genome Research 14:398-405 (2004).
Yamada, K., et al., “Empirical Analysis of Transcriptional Activity in theArabidopsisGenome,” Science 302:842-846 (2003).
Albert Thomas
Green Roland D
Nuwaysir Emile F.
Smith Steve
Moran Marjorie
Quarles & Brady LLP
Roche Nimblegen, Inc.
Sims Jason M
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