Chemistry: molecular biology and microbiology – Measuring or testing process involving enzymes or... – Involving nucleic acid
Reissue Patent
2006-04-04
2008-09-09
Martinell, James (Department: 1634)
Chemistry: molecular biology and microbiology
Measuring or testing process involving enzymes or...
Involving nucleic acid
C436S501000, C536S024300
Reissue Patent
active
RE040494
ABSTRACT:
Methods and compositions for staining based upon nucleic acid sequence that employ nucleic acid probes are provided. Said methods produce staining patterns that can be tailored for specific cytogenetic analyses. Said probes are appropriate for in situ hybridization and stain both interphase and metaphase chromosomal material with reliable signals. The nucleic acid probes are typically of a complexity greater than 50 kb, the complexity depending upon the cytogenetic application. Methods and reagents are provided for the detection of genetic rearrangements. Probes and test kits are provided for use in detecting genetic rearrangements, particularly for use in tumor cytogenetics, in the detection of disease related loci, specifically cancer, such as chronic myelogenous leukemia (CML), retinoblastoma, ovarian and uterine cancers, and for biological dosimetry. Methods and reagents are described for cytogenetic research, for the differentiation of cytogenetically similar but genetically different diseases, and for many prognostic and diagnostic applications.
REFERENCES:
patent: 4675286 (1987-06-01), Calenoff
patent: 4683202 (1987-07-01), Mullis
patent: 4710465 (1987-12-01), Weissman et al.
patent: 4755458 (1988-07-01), Rabbani et al.
patent: 5085983 (1992-02-01), Scanlon
patent: 5242795 (1993-09-01), Croco
patent: 5427932 (1995-06-01), Weier et al.
patent: 5447841 (1995-09-01), Gray et al.
patent: 5472842 (1995-12-01), Stokke et al.
patent: 5503981 (1996-04-01), Mueller et al.
patent: 6280929 (2001-08-01), Gray et al.
patent: 6596479 (2003-07-01), Gray et al.
patent: 6962778 (2005-11-01), Coull et al.
patent: 690 32 920 (1999-09-01), None
patent: 0 430 402 (1991-06-01), None
patent: 0 430 402 (1999-01-01), None
patent: WO 90/05789 (1990-05-01), None
U.S. Appl. No. 07/444,669, Gray et al.
U.S. Appl. No. 07/497,098, Gray et al.
Albertson, D. G., “Mapping Muscle Protein Genes by In Situ Hybridization Using Blotin-Labeled Probes,” The EMBO Journal, 1985, pp. 2493-2498, vol. 4, No. 10.
Angerer, R. C., et al., “In Situ Hybridization to Cellular RNAs,” Genetic Engineering: Principles and Methods, 1985, pp. 43-65, vol. 7, Plenum Press, New York.
Arnoldus, E. P. J., et al., “Detection of the Philadelphia Chromosome in Interphase Nuclei,” Cytogenetics and Cell Genetics, 1990, pp. 108-111, vol. 54.
Bartram, C., R., et al., “Translocation of c-abl Oncogene Correlates with the Presence of a Philadelphia Chromosome in Chronic Myelocytic Leukaemia,” Nature, Nov. 17, 1983, pp. 277-280, vol. 306.
Berezuk, M., et al., “Adjusting Interphase FISH Results in Epithelial Tissue Sections to Whole Cell Complement,” Analytical and Quantitative Cytology and Histology, Apr. 2001, pp. 93-100, vol. 23, No. 2.
Brigati, D. J., et al., “Detection of Viral Genomes in Cultured Cells and Paraffin-Embedded Tissue Sections Using Biotin-Labeled Hybridization Probes,” Virology, 1983, pp. 32-50, vol. 126.
Brison, O., et al., “General Method for Cloning Amplified DNA by Differential Screening with Genomic Probes,” Molecular and Cellular Biology, May 1982, pp. 578-587, vol. 2, No. 5.
Britten, R. J. et al., “Analysis of Repeating DNA Sequences by Reassociation,” Methods of Enzymol, 1974, pp. 363-418, vol. 29.
Buongiorno-Nardelli, M., et al., “Autoradiographic Detection of Molecular Hybrids between rRNA and DNA in Tissue Sections,” Nature, Mar. 7, 1970, pp. 946-948, vol. 225, No. 5236.
Buroker, N. E., et al., “Four Restriction Fragment Length Polymorphisms Revealed by Probes from a Single Cosmid Map to Human Chromosome 12q,” Human Genetics, 1986, pp. 86-94, vol. 72.
Cannizzaro, L. A., et al., “In Situ Hybridization and Translocation Breakpoint Mapping,” Cytogenetics and Cell Genetics, 1985, pp. 173-178, vol. 39.
Coghlan, J. P., et al., “Hybridization Histochemistry,” Analytical Biochemistry, 1985, pp. 1-28, vol. 149.
Cote, B. D., et al., “Quantitation of In Situ Hybridization of Ribosomal Ribonucleic Acids to Human Diploid Cells,” Chromosoma, 1980, pp. 349-367, vol. 80.
Cremer, T., et al., “Detection of Chromosome Aberrations in the Human Interphase Nucleus by Visualization of Specific Target DNAs with Radioactive and Non-Radioactive In Situ Hybridization Techniques: Diagnosis of Trisomy 18 with Probe L1.84,” Human Genetics, 1986, pp. 346-352, vol. 74.
Cremer, T., et al., “Detection of Chromosome Aberrations in Metaphase and Interphase Tumor Cells by In Situ Hybridization Using Chromosome-Specific Library Probes,” Human Genetics, 1988, pp. 235-246, vol. 80.
Decision of the Technical Board of Appeal, Case No. T 0083/01-3.3.2, Boards of Appeal of The European Patent Office, Aug. 10, 2004, pp. 1-8.
“Declaration of Dr. John H. Proffitt Supporting Plaintiffs' Motion to Re-Open Discovery,”The Regents of the University of California,v.Oncor, Inc.,No. C-95-3084, (VRW), pp. 1-4.
Donlon, T. A., “Cytologic Characterization of Human Constitutive Heterochromatin,” Thesis for the Master of Science in Biology, 1981, pp. 1-57.
Egholm, M., et al., “PNA Hybridizes to Complementary Oligonucleotides Obeying the Watson-Crick Hydrogen-Bonding Rules,” Nature, Oct. 7, 1993, pp. 566-568; vol. 365.
Erikson, J., et al., “Heterogeneity of Chromosome 22 Breakpoint in Philadelphia-Positive (Ph+) Acute Lymphocytic Leukemia,” Proceedings of the National Academy of Sciences USA, Mar. 1986, pp. 1807-1811, vol. 83.
Gall, J. G., et al., “Formation and Detection of RNA-DNA Hybrid Molecules in Cytological Preparations,” Proceedings of the National Academy of Sciences USA, 1969, pp. 378-383, vol. 63.
Gall, J. G., et al., “Nucleic Acid Hybridization in Cytological Preparations,” Methods in Enzymology, 1971, pp. 470-480, vol. 21 D.
Gambino, R., et al., “A Limited Number of Globin Genes in Human DNA,” Proceedings of the National Academy of Sciences USA, Oct. 1974, pp. 3966-3970, vol. 71, No. 10.
Golfier, G., et al., “The 200-kb Segmental Duplication on Human Chromosome 21 Originates from a Pericentrometric Dissemination Involving Human Chromosomes 2, 18 and 13,” Gene, 2003, pp. 51-59, vol. 312.
Harper, M. E., et al., “Localization of Single Copy DNA Sequences on G-Banded Human Chromosomes by In Situ Hybridization,” Chromosoma, 1981, pp. 431-439, vol. 83.
Hattori, M., et al., “The DNA Sequence of Human Chromosome 21,” Nature, May 18, 2000, pp. 311-319, vol. 405.
Henderson, A. S., “Cytological Hybridization to Mammalian Chromosomes,” International Review of Cytology, 1982, pp. 1-46, vol. 76.
Heng, H. H. Q., et al., “Fish Technology in Chromosome and Genome Research,” BioEssays, Oct. 9, 1996, pp. 75-84, vol. 19, No. 1.
Hood, L. E., et al., “Structure and Organization of Eucaryotic Chromosomes,” Molecular Biology of Eucaryotic Cells, Chapter 2, 1978, pp. 47-51, Benjamin/Cummings Publishing Co., Menlo Park, CA.
Hopman, A. H. N., et al., “Bi-Color Detection of Two Target DNAs by Non-Radioactive In Situ Hybridization,” Histochemistry, 1986, pp. 1-4, vol. 85.
Ivanov I. G., et al., “On the Heterogeneity of the Slow Reassociating (“Unique”) DNA,” Molecular & Cellular Biochemistry, Jun. 28, 1978, pp. 111-118, vol. 20, No. 2.
Jenson, K. K., et al., “Kinetics for Hybridization of the Peptide Nucleic Acids (PNA) with DNA and RNA Studied with the BIAcore Technique,” Biochemistry, 1997, pp. 5072-5077, vol. 36.
Kallioniemi, O., et al., “ERBB2 Amplification in Breast Cancer Analyzed by Fluorescence In Situ Hybridization,” Proceedings of the National Academy of Sciences USA, Jun. 1992, pp. 5321-5325, vol. 89.
Landegent, J. E., et al., “2-Acetylaminofluorene-Modified Probes for the Indirect Hybridocytochemical Detection of Specific Nucleic Acid Sequences,” Experimental Cell Research, 1984, pp. 61-72, vol. 153.
Lande
Gray Joe W.
Kallioniemi Anne
Kallioniemi Ol'li-Pekka
Pinkel Daniel
Sakamoto Masaru
Fenwick & West LLP
Martinell James
The Regents of the University of California
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