Chimeric binding peptide library screening method

Chemistry: molecular biology and microbiology – Vector – per se

Reexamination Certificate

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C435S006120, C435S007100

Reexamination Certificate

active

09486882

ABSTRACT:
There is described a method of isolating nucleotide sequences encoding target peptides from DNA libraries using DNA binding proteins to link the peptide to the sequence which encodes it. DNA libraries are prepared from cells encoding the protein of interest, or from synthetic DNA, and inserted into, or adjacent to, a DNA binding protein in an expression vector to create a chimeric fusion protein. Incorporation of the vector DNA into a carrier package, during expression of the chimeric fusion protein, results in the production of a peptide display carrier package (PDCP) displaying the DNA-bound fusion protein on the external surface of the carrier package. Employment of affinity purification techniques results in the PDCP particles containing sequences encoding the desired peptide to be selected and the desired nucleotide sequences obtained therefrom.

REFERENCES:
patent: 5270170 (1993-12-01), Schatz et al.
patent: 5403484 (1995-04-01), Ladner et al.
patent: 5498530 (1996-03-01), Schatz et al.
patent: 5597693 (1997-01-01), Evans et al.
patent: 6451527 (2002-09-01), Larocca et al.
patent: PCT/GB91/01134 (1991-07-01), None
patent: PCT/GB92/00883 (1992-05-01), None
patent: PCT/US92/08879 (1992-10-01), None
Gearhart, et al. Inhibition of DNA binding by human estrogen-related receptor 2 and estrogen receptor alpha with minor groove binding polyamides. 2005 Biochemistry 44:4196-4203.
Rebar et al. Zinc finger phage: affinity selection of fingers with new DNA binding specificities. 1994 Science 263:671-673.
Lannigan et al. Estrogen receptor selectively binds the “coding strand” of an estrogen responsive element. 1989 PNAS 86:863-867.
Cull et al Screening for receptor ligands using large libraries of peptides linked to the C terminus of the lac repressor. 1992 PNAS 89: 1865-1869.
Wright et al 1991 Molecular and Cellular Biology 11:4104-4110.
Alex, Sozeri et al 1992 Nucleic Acids Research 20:2257-2263.
Brown, Miles & Sharp, Phillip A.,Human Estrogen Receptor Forms Multiple Protein-DNA Complexes, The Journal of Biological Chemistry, vol. 265, No. 19, pp. 11238-11243 (1990).
Robert A. Coleman and B. Franklin Pugh, Evidence of Functional Binding and Stable Sliding of the TATA Binding Protein on Nonspecific DNA,J Biol Chem270:23, pp. 13850-13859 (1995).
Frances M.P. Wong et al., Cationic Lipid Binding to DNA: Characterization of Complex Formation,Biochemistry35:18, pp. 5756-5763 (1996).
Yuan-Peng Zhang et al., Self-Assembling DNA-Lipid Particles for Gene Transfer,Pharmaceutical Research14:2, pp. 190-196 (1997).
Peterson, G. et al., Dissection of the ATP binding domain of the chaperone hsc70 for interaction with the coefactor Hap46. J. Biol. Chem. (2000) (abstract only).
Vitaliti, A. et al., Inhibition of tumor angiogenesis by a single-chain antibody directed against vascular endothelial growth factor. Cancer Res. 60:4311-4314 (2000) (abstract only).
Petrenko, V.A. and Smith, G.P., Phages from landscape libraries as substitute antibodies. Protein Eng. 13:589-592 (2000) (abstract only).
Ferrieres G. et al., Affinity for the cognate monoclonal antibody of synethic peptides derived from selection by phage display: Role of sequences flanking the binding motif. Eur. J. Biochem. 267:1819-1829 (2000) (abstract only).
Mao, S. et al., Phage-display library selection of high-affinity human single-chain antibodies to tumor-associated carbohydrate antigens sialyl Lewisx and Lewisx. Proc. Natl. Acad. Sci USA 96:6953-6958 (1999) (abstract only).
Ivanenkov, V.V. et al., Targeted delivery of multivalent phage display vectors into mammalian cells. Biochim. Biophys. Acta 1448:463-472 (1999) (abstract only).
Burritt, J.B. et al., Topological mapping of neutrophil cytochrome b epitopes with phage-display libraries. J. Biol. Chem. 270:16974-16980 (1995) (abstract only).
Silverman, G.J. et al., Superantigen properties of a human sialoprotein involved in gut-associated immunity. J. Clin. Invest. 96:417-426 (1995) (abstract only).
Smith, J.W. et al., Building synthetic antibodies as adhesive ligands for integrins. J. Biol. Chem. 269:32788-32795 (1994) (abstract only).
Meulemans, E.V. et al., Selection of phage-displayed antibodies specific for a cytoskeletal antigen by competitive elution with a monoclonal antibody. J. Mol. Biol. 244:353-360 (1994) (abstract only).
Hughes-Jones, N.C. et al., Characterization of human blood group scFv antibodies derived from a V gene phage-display library. Br. J. Haematol. 88: 180-186 (1994) (abstract only).
Tyutyulkova, S. and Paul, S., Selection of functional human immunoglobulin light chains from a phage-display library. Appl. Biochem. Biotechnol. 47:191-197 (1994) (abstract only).
McCafferty, J. et al., Selection and rapid purification of murine antibody fragments that bind a transition-state analog by phage display. Appl. Biochem. Biotechnol. 47:157-171 (1994) (abstract only).
Sasano, M. et al., Molecular selection of human antibodies with an unconventional bacterial B cell antigen. J. Immunol. 151:5822-5839 (1993) (abstract only).
Gawyer, C. et al., Methodology for selection of human antibodies to membrane proteins from a phage-display library. J. Immunol. Methods 26:193-203 (1997) (abstract only).
Iba, Y. and Kurosawa, Y., Comparison of strategies for the construction of libraries of artificial antibodies. Immunol. Cell Biol. 75:217-221 (1997) (abstract only).
Engberg, J. et al., Phage-display libraries of murine and human antibody Fab fragments. Mol. Biotechnol. 6:287-310 (1996) (abstract only).
Fakhfakh, F. et al., Antibody epitopes probed by immunoselected phage-display library peptides in members of a family with various rheumatic manifestations. Clin. Exp. Rheumatol. 14:607-611 (1996) (abstract only).
Barbas, C.F. and Burton, D.R., Selection and evolution of high-affinity human anti-viral antibodies. Trends Biotechnol. 14:230-234 (1996) (abstract only).
Lang, I.M. et al., Recombinant rabbit Fab with binding activity to type-1 plasminogen activator inhibitor derived from a phage-display library against human alpha-granules. Gene 172:295-298 (1996) (abstract only).
Davies, J. and Riechmann, L., Single antibody domains as small recognition units: design and in vitro antigen selection of camelized, human VH domains with improved protein stability. Protein Eng. 9:531-537 (1996) (abstract only).
Germaschewski, V. and Murray, J., Identification of polyclonal serum specificities with phage-display libraries. J. Virol. Methods 58:21-32 (1996) (abstract only).
Ward, R.L. et al., Retrieval of human antibodies from phage-display libraries using enzymatic cleavage. J. Immunol. Methods 189:73-82 (1996) (abstract only).
Walker, J. and Banting, G., Production of phage-display antibodies for epitope mapping. Methods Mol. Biol. 66:391-405 (1996) (citation only).
Weidanz, J.A. et al., Display of functional alphabeta single-chain T-cell receptor molecules on the surface of bacteriophage. J. Immunol. Methods 221:59-76 (1998) (abstract only).
Noronha, E.J. et al., Limited diversity of human scFv fragments isolated by panning a synthetic phage-display scFv library with cultured human melanoma cells. J. Immunol. 161:2968-2976 (1998) (abstract only).
Burritt, J.B. et al., Antibody imprint of a membrane protein surface. Phagocyte flavocytochrome b. J. Biol. Chem. 273:24847-24852 (1998) (abstract only).
Iba, Y. et al., Changes in the specificity of antibodies against steroid antigens by introduction of mutations into complementarity-determining regions of the V(H) domain. Protein Eng. 11:361-370 (1998) (abstract only).
Jacobsson, J. and Frykberg, J., Gene VIII-based, phage-display vectors for selection against complex mixtures of libands. Biotechniques 24:294-301 (1998) (abstract only).
Lamarre, A. and Talbot, P.J., Characterization of phage-displayed recombinant anti-idiotypic antibody fragments against coronavirus-neutralizing monoclonal antibodies. Viral. Immunol. 10:175-182 (1997) (abstract only).
Irving, R.A. et al., Affinity maturation of recombinant antibodies usingE. colimutator cells. Immunotechnology 2:127-143 (1996) (abstract only).
Hughes MR et al.,Biochemistry, 1981

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