Chemistry: molecular biology and microbiology – Maintaining blood or sperm in a physiologically active state...
Reexamination Certificate
2007-03-13
2007-03-13
Patterson, Jr., Charles L. (Department: 1652)
Chemistry: molecular biology and microbiology
Maintaining blood or sperm in a physiologically active state...
C435S004000, C436S151000
Reexamination Certificate
active
10739585
ABSTRACT:
The invention relates to a method for detecting a double-stranded region in a nucleic acid by (1) providing two separate, adjacent pools of a medium and a interface between the two pools, the interface having a channel so dimensioned as to allow sequential monomer-by-monomer passage of a single-stranded nucleic acid, but not of a double-stranded nucleic acid, from one pool to the other pool; (2) placing a nucleic acid polymer in one of the two pools; and (3) taking measurements as each of the nucleotide monomers of the single-stranded nucleic acid polymer passes through the channel so as to differentiate between nucleotide monomers that are hybridized to another nucleotide monomer before entering the channel and nucleotide monomers that are not hybridized to another nucleotide monomer before entering the channel.
REFERENCES:
patent: 3856633 (1974-12-01), Fletcher, III
patent: 4456522 (1984-06-01), Blackburn
patent: 4521729 (1985-06-01), Kiesewetter et al.
patent: H201 (1987-01-01), Yager
patent: 4661235 (1987-04-01), Krull et al.
patent: 4874499 (1989-10-01), Smith et al.
patent: 5001048 (1991-03-01), Taylor et al.
patent: 5111221 (1992-05-01), Fare et al.
patent: 5221447 (1993-06-01), Hjerten
patent: 5234566 (1993-08-01), Osman et al.
patent: 5356776 (1994-10-01), Kambara et al.
patent: 5376878 (1994-12-01), Fisher
patent: 5378342 (1995-01-01), Ikematsu et al.
patent: 5503744 (1996-04-01), Ikematsu et al.
patent: 5612179 (1997-03-01), Simons
patent: 5795782 (1998-08-01), Church et al.
patent: 5833826 (1998-11-01), Nordman
patent: 5911871 (1999-06-01), Preiss et al.
patent: 6015714 (2000-01-01), Baldarelli et al.
patent: 6054035 (2000-04-01), Kambara
patent: 6156502 (2000-12-01), Beattie
patent: 6190865 (2001-02-01), Jendrisak et al.
patent: 6203993 (2001-03-01), Shuber et al.
patent: 6214545 (2001-04-01), Dong et al.
patent: 6221603 (2001-04-01), Mahtani
patent: 6238866 (2001-05-01), Yeh et al.
patent: 6267872 (2001-07-01), Akeson et al.
patent: 6355420 (2002-03-01), Chan
patent: 6362002 (2002-03-01), Denison
patent: 6403311 (2002-06-01), Chan
patent: 6464842 (2002-10-01), Golovchenko et al.
patent: 6528258 (2003-03-01), Russell
patent: 6627067 (2003-09-01), Branton et al.
patent: 6673615 (2004-01-01), Denison et al.
patent: 6746594 (2004-06-01), Akeson et al.
patent: 6783643 (2004-08-01), Golovchenko et al.
patent: 2002/0039737 (2002-04-01), Chan et al.
patent: 2002/0081744 (2002-06-01), Chan et al.
patent: 2002/0119455 (2002-08-01), Chan et al.
patent: 2003/0044816 (2003-03-01), Denison et al.
patent: 2003/0059822 (2003-03-01), Chan et al.
patent: 2003/0066749 (2003-04-01), Golovchenko et al.
patent: 2003/0104428 (2003-06-01), Branton et al.
patent: 30 28 569 (1982-02-01), None
patent: 2 232 769 (1990-12-01), None
patent: WO 94/25862 (1994-11-01), None
patent: WO 98/35012 (1998-08-01), None
patent: WO 00/09757 (2000-02-01), None
patent: WO 00/56937 (2000-09-01), None
patent: WO 00/78668 (2000-12-01), None
patent: WO 00/79257 (2000-12-01), None
patent: WO 01/18251 (2001-03-01), None
patent: WO 01/42782 (2001-06-01), None
patent: WO 01/59684 (2001-08-01), None
patent: WO 02/42496 (2002-05-01), None
patent: WO 03/000920 (2003-01-01), None
patent: WO 03/003446 (2003-01-01), None
patent: WO 2004/077503 (2004-09-01), None
Akeson et al., “Microsecond Time-Scale Discrimination among Polycytidylic Acid, Polyadenylic Acid, and Polyuridylic Acid as Homopolymers or as Segments within Single RNA Molecules,”Biophys. J.77:3227-3233 (1999).
Auld et al., “A Neutral Amino Acid Change in Segment IIS4 Dramatically Alters the Gating Properties of the Voltage-Dependent Sodium Channel,”Proc. Natl. Acad. Sci. USA87:323-327 (1990).
Bensimon et al., “Alignment and Sensitive Detection of DNA by a Moving Interface,”Science265:2096-2098 (1994).
Benz et al., “Mechanism of Sugar Transport through the Sugar-Specific LamB Channel ofEscherichia coliOuter Membrane,”J. Membr. Biol.100:21-29 (1987).
Benz et al., “Pore Formation by LamB ofEscherichia coliin Lipid Bilayer Membranes,”J. Bacteriol.165:978-986 (1986).
Bezrukov et al., “Counting Polymers Moving through a Single Ion Channel,”Nature370:279-281 (1994).
Boulain et al., “Mutagenesis by Random Linker Insertion into the LamB Gene ofEscherichia coliK12,”Mol. Gen. Genet.205:339-348 (1986).
Boulanger et al., “Characterization of Ion Channels Involved in the Penetration of Phage T4 DNA intoEscherichia coliCells,”J. Biol. Chem.263:9767-9775 (1988).
Boulanger et al., “Ion Channels are Likely to be Involved in the Two Steps of Phage T5 DNA Penetration intoEscherichia coliCells,”J. Biol. Chem.267:3168-3172 (1992).
Boyd et al., “Determinants of Membrane Protein Topology,”Proc. Natl. Acad. Sci. USA84:8525-8529 (1987).
Branton et al., “Biochemical Sensors. Adapting to Nanoscale Events,”Nature398:660-661 (1999).
Charbit et al., “Permissive Sites and Topology of an Outer Membrane Protein with a Reporter Epitope,”J. Bacteriol.173:262-275 (1991).
Dargent et al., “Effect of Point Mutations on theIn-VitroPore Properties of Maltoporin, a Protein ofEscherichia coliOuter Membrane,”J. Mol. Biol.201:497-506 (1988).
Dargent et al., “Selectivity for Maltose and Maltodextrins of Maitoporin, a Pore-Forming Protein ofE. coliOuter Membrane,”FEBS Lett.220:136-142 (1987).
Deamer et al., “Characterization of Nucleic Acids by Nanopore Analysis,”Acc. Chem. Res.35:817-825 (2002).
DeBlois et al., “Electrokinetic Measurements with Submicron Particles and Pores by the Resistive Pulse Technique,”J. Colloid Interface Sci.61:323-335 (1977).
Ehrmann et al., “Genetic Analysis of Membrane Protein Topology by a Sandwich Gene Fusion Approach,”Proc. Natl. Acad. Sci. USA87:7574-7578 (1990).
Ferenci et al., “Channel Architecture in Maltoporin: Dominance Studies with LamB Mutations Influencing Maltodextrin Binding Provide Evidence for Independent Selectivity Filters in Each Subunit,”J. Bacteriol.171:855-861 (1989).
Ghadiri et al., “Artificial Transmembrane Ion Channels from Self-Assembling Peptide Nanotubes,”Nature369:301-304 (1994).
Hall et al., “Alamethicin. A Rich Model for Channel Behavior,”Biophys. J.45:233-247 (1984).
Hamill et al., “Improved Patch-Clamp Techniques for High-Resolution Current Recording from Cells and Cell-Free Membrane Patches,”Pflügers Arch.391:85-100 (1981).
Harrington et al., “the F Pilus ofEscherichia coliAppears to Support Stable DNA Transfer in the Abscence of Wall-to-Wall Contact between Cells,”J. Bacteriol.172:7263-7264 (1990).
Heinemann et al., “Open Channel Noise: IV. Estimation of Rapid Kinetics of Formamide Block in Gramicidin A Channels,”Biophys. J.54:757-764 (1988).
Heinemann et al., “Open Channel Noise: V. Fluctuating Barriers to Ion Entry in Gramicidin A Channels,”Biophys. J.57:499-514 (1990).
Henry et al., “Blockade of a Mitochondrial Cationic Channel by an Addressing Peptide: An Electrophysiological Study,”J. Membr. Biol.112:139-147 (1989).
Hoshi et al., “Biophysical and Molecular Mechanisms of Shaker Potassium Channel Inactivation,”Science250:533-538 (1990).
Hoshi et al., “Two Types of Inactivation in Shaker K+Channels: Effects of Alterations in the Carboxy-Terminal Region,”Neuron7:547-556 (1991).
Kasianowicz et al., “Characterization of Individual Polynucleotide Molecules Using a Membrane Channel,”Proc. Natl. Acad. Sci. USA93:13770-13773 (1996).
Kubitschek, “Electronic Counting and Sizing of Bacteria,”Nature182:234-235 (1958).
Lakey et al., “The Voltage-Dependent Activity ofEscherichia coliPorins in Different Planar Bilayer Reconstitutions,”Eur. J. Biochem.186:303-308 (1989).
Lopez et al., “Hydrophobic Substitution Mutations in the S4 Sequence Alter Voltage-Dependent Gating in Shaker K+Channels,”Neuron7:327-336 (1991).
Li et al.,
Akeson Mark
Branton Daniel
Church George
Deamer David W.
Bieker-Brady Kristina
Clark & Elbing LLP
Patterson Jr. Charles L.
President and Fellows of Harvard College
Regents of the University of California
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