Data processing: structural design – modeling – simulation – and em – Modeling by mathematical expression
Reexamination Certificate
2005-07-01
2011-12-13
Brusca, John S (Department: 1631)
Data processing: structural design, modeling, simulation, and em
Modeling by mathematical expression
C703S011000, C702S027000
Reexamination Certificate
active
08078432
ABSTRACT:
A method for evaluating the binding of an evaluation target molecule with respect to a macromolecular compound based on numerical calculations and which detects the binding sites of the evaluation target molecule with respect to the macromolecular compound as a site where electronic states in a predetermined restricted region including the evaluation target molecule and the part of the macromolecular compound, which is adjacent to the evaluation target molecule, are unstable.
REFERENCES:
patent: 2002/0062155 (2002-05-01), Itai et al.
patent: 1 010 681 (2000-06-01), None
patent: WO 97/24301 (1997-07-01), None
Huang et al. Anti-HIV Agents That Selectively target Retroviral Nucleocapsid Protein Zinc Fingers without Affecting Cellular Zinc Finger Proteins. Journal of Medicinal Chemistry vol. 41, pp. 1371-1381 (1998).
Vinter Extended electron distributions applied to the molecular mechanics of some intermolecular interactions. Journal of Computer Aided Molecular Design vol. 8, pp. 653-668 (1994).
MacKerell et al. All-Atom Empirical Potential for Molecular Modeling and Dynamics Studies of Proteins Journal of Physical Chemistry B vol. 102, pp. 3586-3616 (1998).
Gogonea Quantum mechanical/quantum mechanical methods. I. A divide and conquer strategy for solving the Schrodinger equation for large molecular systems using a composite density functional-semiempirical Hamiltonian Journal of Chemical Physics vol. 113, pp. 5604-5613 (2000).
Maynard et al. Reacivity of the HIV-1 nucleocapsid protein p7 zinc finger domains from the perspective of density-functional theory Proceedings of the National Academy of Sciences USA vol. 95, pp. 11578-11583 (1998).
Nakajima et al. Flexible docking of a ligand peptide to a receptor protein by multicanonical molecular dynamics simulation Chemical Physics Letters vol. 278, pp. 297-301 (1997).
Mortimer Chemistry A Conceptual Approach pp. 53-59 Van Nostrand Reinhold Co. New York (1971).
Takeshi Onda et al., Type-specific Regulation of Adenylyl Cyclase, The Journal of Biological Chemistry, 276 No. 51 pp. 47785-47793, Dec. 21, 2001.
International Search Report PCT/JP2005/012200 dated Aug. 10, 2005 (Japanese Patent Office).
Transmittal letter from European Patent Office dated Jan. 14, 2009, forwarding Supplementary European Search Report in EP 05765321, and forwarding letter from Marks & Clerk to Shiga International Patent Office date-stamped received Feb. 2, 2009 (10 pages total).
Khandogin et al.,“Quantum Descriptors for Biological Macromolecules from Linear-Scaling Electronic Structure Methods”, Proteins; Structure, Function, and Bioinformatics, vol. 56, No. 4, May 14, 2004, pp. 724-737.
Damjanovic et al., “Excitons in a Photosynthetic Light-Harvesting System: A Combined Molecular Dynamics, Quantum Chemistry, and Polaron Model Study”, Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics, The American Physical Society, Mar. 2002, vol. 65, No. 3, pt. 1, Mar. 2002, pp. 031919-1 through 031919-24.
Fuentealba et al., “Fukui Function in Chemistry” (online), Aug. 8, 2002, pp.1-43, Universidad de Chile Satniago, Chile, retrieved from the Internet: URL:http://www.nucleomileniocuantica.cl/personal/pfuentealba/parrvolu3.pdf>, retrieved Dec. 12, 2008.
Eguchi Haruki
Yano Toshikazu
Brusca John S
Ishikawajima-Harima Heavy Industries Co., Ltd
Ostrolenk Faber LLP
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