Chemistry: molecular biology and microbiology – Measuring or testing process involving enzymes or...
Reexamination Certificate
2001-06-19
2002-07-02
Leary, Louise N. (Department: 1623)
Chemistry: molecular biology and microbiology
Measuring or testing process involving enzymes or...
C435S007200, C435S007100, C536S123120, C536S123100, C536S055100, C436S501000
Reexamination Certificate
active
06413715
ABSTRACT:
BACKGROUND OF THE INVENTION
Immunocompromised patients are susceptible to a variety of neoplastic, protozoal, viral, bacterial and fungal diseases; of these, bacterial, viral and fungal infections result in the greatest mortality (Bartlett, M. and J. Smith,
Clin. Microbiol. Rev.
4:137 (1991); Bodey, G. et al.,
Dur. J. Clin. Microbiol. Infect. Dis.
11:99 (1992); Sternberg, S.,
Science
266:1632 (1994); Cox, G. and J. Perfect,
Curr. Opin. Infect. Dis.
6:422 (1993); Deepe, G. and W. Bullock,
Dur. J. Clin. Microbiol. Infect. Dis.
9:377 (1990); Fox, J. L.,
ASM News
59:515 (1993); Kujath, P.,
Mycoses
35:225 (1992); Pfaller, M. and R. Wenzel,
Dur. J. Clin. Microbiol. Infect. Dis.
11:287 (1992); and Samonis, G. and D. Bafaloukos, In vivo 6:183 (1992)). Systemic fungal infections are now an important medical problem in the care of immunocompromised patients. Fungal infections in immunocompromised patients are mainly the result of opportunistic infections by normally harmless, asymptomatic commensals, which can be pathogenic under certain conditions (Odd, J.,
Antimicrob. Chemother.
31:463 (1993); Rhodes, J. et al.,
J. Med. Vet. Myc.
20:113 (1992); Saral,
R. Rev. Infect. Dis.
13:487 (1991)). Species of Cryptococcus, Candida, Coccidioides, Histoplasma, Blastomyces, Sporothrix and Aspergillus, as well as other opportunistic fungi, are important causative agents; of these, Candida species, especially
C. albicans
, are the most common. Candidemia accounts for 8-10% of all hospital-acquired bloodstream infections and Candida species are the fourth most common cause of nosocomial septicemias. Mortality rates associated with systemic Candida infections are estimated to be as high as 50% of infected patients. Infections caused by other types of fungi (e.g., Aspergillus, Cryptococcus) are also common in immunocompromised patients and carry significant treatment costs and mortality levels (Meunier, F.,
Amer. J. Med.
99 (Suppl. 6A):60S-67S (1995)).
A variety of approaches have been used to diagnose fungal infections in humans; each method has distinct limitations. Blood cultures often fail to detect existing infections and may take two to five days to detect fungal growth, a period of time which an infected patient often cannot survive. Assays for fungal-specific metabolites are also used. For example, an assay for D-arabinitol can be performed by monitoring of oxidation of D-arabinitol by D-arabinitol dehydrogenase (Soyama, K. and E. Ono,
Clin. Chim. Acta
149:149 (1985); Soyama, K. and E. Ono,
Clin. Chim. Acta.
168:259 (1987)). However, D-arabinitol dehydrogenase also reacts with D-mannitol naturally existing in serum samples, resulting in an artificially high oxidation rate. Furthermore, both D-mannitol and D-arabinitol are elevated during renal failure (Reiss, E. and C. Morrison,
J. Clin. Microbiol. Rev.
6:311-322 (1993)).
Immunoassays to detect antibody binding to a fungal marker antigen have also been developed: for example, an assay for enolase secreted by
C. albicans
is described (Matthews, R. C. et al.,
Lancet i:
1415 (1984), Matthews, R. C. et al.,
J. Clin. Microbiol.
26:459 (1988), and Walsh, et al.,
New. Engl. J. Med.
324:1026 (1991)). However, the capture antibody is believed to react with enolases from sources other than
C. albicans
(Reiss, E. and C. Morrison,
J. Clin. Microbiol. Rev.
6:311-322 (1993) , and the sensitivity is limited (Mitsutake, K. et al.,
J. Clin. Microbiol.
34:1918-1921 (1996)). Another assay uses detection of aspartyl proteinase secreted from
C. albicans
(Staib, R., Sabouraudia 4:187 (1965); Reiss, E. and C. J. Morrison,
Clin. Microbiol. Rev.
6:311 (1993)). An assay to detect secreted &bgr;(1-3)-glucan, based on activation of factor G of the Limulus coagulation enzyme cascade, is also described (U.S. Pat. No. 5,266,461); however, this assay is sensitive to a number of interfering compounds, including compounds of fungal origin (Matsumoto, T. M. et al.,
Urol. Res.
21:21-117-120 (1993)).
Additional assays include immunological assays to detect antigens, such as cell-wall mannan, circulating through the host during fungal infection, by radioimmunassay (RIA) (Weiner, M. H. and M. Coats-Stephen,
J. Infect. Dis.
140:989 (1979) ), inhibition enzyme immunoassay (Meckstroth, K. L. et al.,
J. Infect. Dis.
144:24 (1981); Segal, E. et al.,
J. Clin. Microbiol.
10:116-118 (1979)), and double antibody sandwich enzyme immunoassay (Lew, M. A. et al.,
J. Infect. Dis.
145:45-56 (1982)). Reliability of these tests may be hampered by the presence of anti-mannan antibodies and cell-wall binding proteins. Furthermore, the concentration of the antigen is low, even with severe infection, so detection can be difficult.
Amplification of sample DNA by polymerase chain reaction (PCR) has been used with fungal-specific nucleotide probes to detect the presence of fungal DNA (U.S. Pat. Nos. 5,489,513; 5,426,027; and 5,324,632). These methods are complicated, expensive, time-consuming and often are sensitive to interfering materials found in the host sample (Reiss, E. and C. Morrison,
J. Clin. Microbiol. Rev.
6:311-323 (1993)).
Thus, each of the variety of methods for diagnosing fungal infection has deficiencies, including unreliability, interfering agents, or a need for sophisticated equipment or trained personnel. Because of the increasing incidence of fungal infections, a need remains for accurate, simple, quantitative and expedient methods for diagnosis of fungal infections.
SUMMARY OF THE INVENTION
The present invention is drawn to methods of isolating, concentrating or purifying &bgr;(1-3)-glucans, as well as &bgr;(1-3)-glucan-containing organisms, and also to assays to quantify the amount of &bgr;(1-3)-glucans, or &bgr;(1-3)-glucan-containing organisms in a test sample. The test sample can be a liquid or a solid, and can originate from various sources, including complex animal sources (e.g., a biological fluid, such as blood, serum, plasma, urine, feces, mucus, sputum, bile, ascites fluid, wound secretions, vaginal excretions, synovial fluid, cerebrospinal fluid, peritoneal lavage fluid, lung lavage fluid, ocular fluid, saliva or whole tissue extract; alternatively, the test sample can be solid specimen, such as skin or other tissue); plant sources (plant tissue, plant tissue extract, fruit or fruit extracts, seeds or seed extracts, sap, or homogenates); bacterial cells; viral cells; fungal cells; tissue cultures; environmental sources; food sources; or fermentation process sources.
In the methods of the invention, a &bgr;(1-3)-glucan binding agent is used to capture or purify &bgr;(1-3)-glucans and/or &bgr;(1-3)-glucan-containing organisms from a test sample. &bgr;(1-3)-glucan binding agents are compounds that have an affinity for underivatized, aqueous soluble &bgr;(1-3)-glucan, including lactosyl ceramide (LacCer) (human), LacCer (bovine), LacCer (porcine), galactosyl ceramide (GalCer) I, GalCer II, globotriaosyl ceramide (globotriaosylCer), and asialoganglioside-GM1. The &bgr;(1-3)-glucan binding agent(s), or the test sample, can be coupled or attached to a solid phase or a fluid phase. The test sample is contacted with a &bgr;(1-3)-glucan binding agent, under conditions that are suitable for binding of any &bgr;(1-3)-glucan that may be present in the test sample to the &bgr;(1-3)-glucan binding agent; resultant complexes of &bgr;(1-3)-glucan and &bgr;(1-3)-glucan binding agent (“primary complexes”) can then be isolated, in order to isolate &bgr;(1-3)-glucan. In another embodiment, the primary complexes can be detected, in order to detect &bgr;(1-3)-glucan or &bgr;(1-3)-glucan-containing organisms in the test sample: the presence of primary complexes is indicative of the presence of &bgr;(1-3)-glucan or &bgr;(1-3)-glucan-containing organisms. In another embodiment, the presence of &bgr;(1-3)-glucan can be detected through a competition assay, in which labeled underivatized, aqueous soluble &bgr;(1-3)-glucan and &bgr;(1-3)-glucan binding agents are incubated with the test sample; the amount of &bgr;(1-3)-glucan in the test sample
Fisette Leslie W.
Mackin William M.
Wakshull Eric M.
Zimmerman Janet W.
Darby & Darby
Leary Louise N.
The Collaborative Group
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