Bacterial leader sequences for increased expression

Chemistry: molecular biology and microbiology – Micro-organism – tissue cell culture or enzyme using process... – Recombinant dna technique included in method of making a...

Reexamination Certificate

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C435S320100, C435S252300, C530S350000, C536S023100

Reexamination Certificate

active

07833752

ABSTRACT:
Compositions and methods for improving expression and/or secretion of a polypeptide of interest in a host cell are provided. Compositions including a coding sequence for a bacterial secretion signal peptide are provided. The compositions of the invention are useful for increasing accumulation of properly processed proteins in the periplasmic space of a host cell, or for increasing secretion of properly processed proteins. In particular, isolated secretion signal peptide-encoding nucleic acid molecules are provided. Additionally, amino acid sequences corresponding to the nucleic acid molecules are encompassed. The present invention provides for isolated nucleic acid molecules including nucleotide sequences encoding the amino acid sequences shown in SEQ ID NO:2, 4, 6, 8, 10, 12, 14, 16, 18, 20, 22, and 24, and the nucleotide sequences set forth in SEQ ID NO:1, 3, 5, 7, 9, 11, 13, 15, 17, 19, 21, and 23, as well as variants and fragments thereof.

REFERENCES:
patent: 4963495 (1990-10-01), Chang et al.
patent: 5082783 (1992-01-01), Ernst et al.
patent: 5232840 (1993-08-01), Olins
patent: 5288852 (1994-02-01), Yamada et al.
patent: 5348867 (1994-09-01), Georgiou
patent: 5378806 (1995-01-01), Willis
patent: 5595898 (1997-01-01), Robinson et al.
patent: 5629172 (1997-05-01), Mascarenhas et al.
patent: 5641671 (1997-06-01), Bos et al.
patent: 5698435 (1997-12-01), Robinson et al.
patent: 5801017 (1998-09-01), Werber et al.
patent: 5801018 (1998-09-01), Potter
patent: 5914254 (1999-06-01), Mascarenhas et al.
patent: 5958754 (1999-09-01), Wong et al.
patent: 6156552 (2000-12-01), Okkels et al.
patent: 6204023 (2001-03-01), Robinson et al.
patent: 6225104 (2001-05-01), Cavaliere Vesely et al.
patent: 6258560 (2001-07-01), Leung et al.
patent: 6329172 (2001-12-01), Rhee et al.
patent: 6495357 (2002-12-01), Fuglsang et al.
patent: 6509181 (2003-01-01), Danielsen et al.
patent: 6524827 (2003-02-01), Moller et al.
patent: 6528298 (2003-03-01), Svendsen et al.
patent: 6558939 (2003-05-01), Nørregaard-Madsen et al.
patent: 6608018 (2003-08-01), Shinohara
patent: 6617143 (2003-09-01), Fukuyama
patent: 7618799 (2009-11-01), Coleman
patent: 2003/0013150 (2003-01-01), Manosroi et al.
patent: 2003/0044906 (2003-03-01), Habermann et al.
patent: 2003/0064435 (2003-04-01), Weiner et al.
patent: 2003/0180937 (2003-09-01), Georgiou
patent: 0117343 (1987-03-01), None
patent: 0121352 (1988-07-01), None
patent: 2006-03356-7 (2008-05-01), None
patent: WO-89-10971 (1989-11-01), None
patent: WO-93-02198 (1993-02-01), None
patent: WO-96-17943 (1996-06-01), None
patent: WO-00-59537 (2000-10-01), None
patent: WO-01-21662 (2001-03-01), None
patent: WO-02-40696 (2002-05-01), None
patent: WO-02-68660 (2002-06-01), None
patent: WO-03-068926 (2003-08-01), None
patent: WO-03-079007 (2003-09-01), None
patent: WO-03-089455 (2003-10-01), None
patent: WO-2005-69913 (2005-08-01), None
patent: WO-2005-69913 (2005-08-01), None
patent: WO-2005-89093 (2005-09-01), None
Agarraberes eta l, “Protein Translocation Across Membranes,” Biochim. Biophys. Acta 1513:1-24 (2001).
AJ236686/c, EMBL Accession No., available May 2, 2000.
Arvidsson et al., “The azurin gene fromPseudomonas aeruginosa. Cloning and characterization,” Eur. J. Biochem. 170:195-200 (1989).
Bardwell et al., “Pathways of Disulfide Bond Formation in Proteins in Vivo,” Phosphate Microorg. 270-275 (1994).
Bode et al., EST Database Accession No. CO372298/c, available Jun. 29, 2004.
Burkovski and Kramer, “Functional expression of the glutamate uptake system fromCorynebacterium glutamicuminEscherichia coli,” FEMS Micr. Lett. 127:263-266 (1995).
Cross et al., “CpG Island Libraries from Human Chromosomes 18 and 22: Landmarks for Novel Genes,” Mammalian Genome 11:373-383 (2000) (XP002381699).
De et al., “Channel-forming properties and structural homology of major outer membrane proteins fromPseudomonas fluorescensMFO and OE 28.3,”FEMS Micr. Lett. 127:267-272 (1995).
Derman et al., “Mutations that Allow Disulfide Bond Formation in the Cytoplasm ofEscherichia coli,” Science 262:1744-1747 (1993).
EBI Accession No. Q88C54 dated Jun. 1, 2003.
EMBL Database Accession No. AF057031, 1998 (XP-002483318).
Hockney, “Recent Developments in Heterologous Protein Production inEscherichia coli,” Trends Biotechnol. 12:456-463 (1994).
Huber, D., “Use of Thioredoxin as a Reporter to Identify a Subset ofEscherichia coliSignal Sequences That Promote Signal Recognition Particle-Dependent Translocation,” J. Bacteriology 187(9):2983-2991 (2005).
Ma, Q. et al., “Protein Secretion Systems ofPseudomonas aeruginosaandP. fluorescens,” Biochim Biophys. Acta 1611(No. 1-2):223-233 (2003).
Manoil, “Tagging Exported Proteins UsingEscherichia coliAlkaline Phosphatase Gene Fusions,” Methods in Enzymology 326:35-47 (2000).
Miot, M. And Betton, J., “Protein Quality Control in the Bacterial Periplasm,” Microbial Cell Factories, 2004, pp. 1-13.
Muller et al., “Protein Traffic in Bacteria: Multiple Routes from the Ribosome to and Across the Membrane,” Prog. Nucl. Acid. Res. Mol. Biol. 66:107-157 (2001).
NCBI Database Accession No. Q3KH17, Direct Submission Aug. 2005 (SP-002483317), Nov. 2006.
NCBI Report for Accession No. YP—346180, Direct Submission on Aug. 8, 2005, Apr. 2008.
Paulson et al., “Complete genome sequence of the plant commensalPseudomonas fluorescensPf-5,” Nature Biotech. 23:873-878 (2005).
Retallack, D.M. et al., “Transport of Heterologous Proteins to the Periplasmic Space ofPseudomonas fluorescensUsing a Variety of Native Signal Sequences,” Biotechnol. Lett. 29(10):1483-1491 (2007).
Schein, “Production of Soluble Recombinant Proteins in Bacteria,” Bio/Technology 7:1141-1149 (1989).
Toyama et al., “Azurin Involved in Alcohol Oxidation System inPseudomonas putidaHK5: Expression Analysis and Gene Cloning,” Biosci. Biotechnol. Biochem. 65(7):1617-1626 (2001) (XP-002441554.
Urban, A. et al., “DsbA and DsbC Affect Extracellular Enzyme Formation inPseudomonas aeruginosa,” J. Bacteriol. 183(2):587-596 (2001).
Wang, H. et al., “High-level Expression of Human TFF3 inEscherichia coli,” Peptides 26(7):1213-1218 (2005).
Whitelaw et al., EST Database Accession No. BZ685867/c, available Feb. 5, 2003.
Wu et al., “Cloning and Characterization ofPseudomonas putidaGenes Encoding the Phosphate-Specific Transport System,” J. Bioscience Bioengineering 87(3):273-279 (1999).
Yamano et al., “Cloning and nucleotide sequence of anaerobically induced porin protein E1 (OprE) ofPseudomanas aeruginosaPAO1,” Mol. Microbiology 8(5):993-1004 (1993).
EP04817876 Search Report dated Jul. 9, 2007.
PCT/US04/39316 Search Report dated Aug. 7, 2005.
PCT/US08/52434 Search Report dated Sep. 25, 2008.
U.S. Appl. No. 10/996,007 Office Action mailed Jul. 11, 2008.

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