Automatic detection of quality spectra

Details Automatic detection of quality spectra Automatic detection of quality spectra

2007-06-12

2007-06-12

Wells, Nikita (Department: 2881)

Radiant energy

Ionic separation or analysis

With sample supply means

C250S281000, C250S282000, C436S086000, C436S173000

Reexamination Certificate

active

11122364

ABSTRACT:
The present application provides systems and/or methods for accessing a portion of a mass-fragment spectrum, constructing a vector that is responsive to an intensity-balance of the spectrum, and selecting the spectrum responsive to the vector.

REFERENCES:
patent: 5538897 (1996-07-01), Yates, III et al.
patent: 6017693 (2000-01-01), Yates et al.
patent: 6489121 (2002-12-01), Skilling
patent: 6770871 (2004-08-01), Wang et al.
patent: 6799121 (2004-09-01), Chu et al.
patent: 6846679 (2005-01-01), Schmidt et al.
Automatic Quality Assessment of Peptide Tandem Mass Spectra published in Bioinfomatics, vol. 20, Supp. 1, 2004, pp. i49-i54 (DOI:10.1093/bioinformatics/bth947), published date Jul. 31-Aug. 4, 2004.
Code Developments to Improve the Efficiency of Automated MS/MS Spectra Interpretation, Journal of Proteome Research 2002, 1, pp. 211-215, published on Web Mar. 6, 2002.
Proteome Research: Mass Spectrometry, Peter James, ISBN 3-540-67256-7 Springer-Verlag Berlin Heidelberg New York (7 Protein Identification by SEQUEST, David L. Tabb, Jimmy K. Eng, and John R. Yates III) (5 pages).
An Approach to Correlate Tandem Mass Spectral Data of Peptides with Amino Acid Sequences in a Protein Database, J Am Soc Mass Spectrom 1994, 5, Jimmy K. Eng, Ashley L. McCormack, and John R. Yates, III, pp. 976-989.
Intensity-Based Statistical Scorer for Tandem Mass Spectrometry, Analytical Chemistry, vol. 75, No. 3, Feb. 1, 2003, Moshe Havilio, Yariv Haddad, and Zeev Smilansky, pp. 435-444.
Making Large-Scale SVM Learning Practical, Thorsten Joachims, Support Vector Learning, Bernhard Scholkopf, Christopher J. C. Burges, and Alexander J. Smola (eds.), MIT Press, Cambridge, USA, 1998, pp. 41-56.
7 Protein Identification by Sequest, Proteome Research: Mass Spectrometry, Peter James, ISBN 3-540-67256-7,Springer-Verlag Berlin Heidelberg New York, David L. Tabb, Jimmy K. Eng, and John R. Yates III, pp. 125-142.
Bern, M., et al., “Automatic Quality Assessment of Peptide Tandem Mass Spectra”,Bioinformatics,Oxford University Press, 2004, vol. 20, Suppl. 1, pp. i49-i54, XP007901066, ISSN: 1367-4803.
Prados, J., et al., “Mining Mass Spectra for Diagnosis and Biomaker Discovery of Cerebral Accidents”,Proteomics,2004 Wiley-VCH Verlag Gmbh & Co. KGaA, Weinhelm, vol. 4, No. 8, pp. 2320-2332, XP008039497, ISSN: 1615-9853.
European Search Report, Ep06009373.9-1224, Search completed Sep. 13, 2006, Examiner Anton Versluis, The Hague.

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