Automated DNA sequencing technique

Chemistry: molecular biology and microbiology – Measuring or testing process involving enzymes or... – Involving nucleic acid

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435 911, 536 243, 536 254, 536 253, 536 2532, 935 77, 935 78, C12Q 168, C12P 1934, C07H 2104

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058210580

ABSTRACT:
A process for the electrophoretic analysis of DNA fragments produced in DNA sequencing operations wherein chromophores or fluorophores are used to tag the DNA fragments produced by the sequencing chemistry and permit the detection and characterization of the fragments as they are resolved by electrophoresis through a gel. Preferably four different fragment sets are tagged with the fluorophores fluorescein, Texas Red, tetramethyl rhodamine, and 7-nitrobenzofurazan. A system for the electrophoretic analysis of DNA fragments produced in DNA sequencing operations comprising: a source of chromophore or fluorescent tagged DNA fragments; a zone for contacting an electrophoresis gel; means for introducing said tagged DNA fragments to said zone; and photometric means for monitoring said tagged DNA fragments as they move through said gel.

REFERENCES:
patent: 3906031 (1975-09-01), Carpino et al.
patent: 4119521 (1978-10-01), Chirilkjian
patent: 4151065 (1979-04-01), Kaplan et al.
patent: 4318846 (1982-03-01), Khanna et al.
patent: 4373071 (1983-02-01), Itakura
patent: 4375401 (1983-03-01), Catsimpoolas
patent: 4401796 (1983-08-01), Itakura
patent: 4415732 (1983-11-01), Caruthers et al.
patent: 4474948 (1984-10-01), Hudson et al.
patent: 4483964 (1984-11-01), Urdea et al.
patent: 4500707 (1985-02-01), Caruthers et al.
patent: 4517338 (1985-05-01), Urdea et al.
patent: 4534647 (1985-08-01), Gross et al.
patent: 4598049 (1986-07-01), Zelinka et al.
patent: 4605735 (1986-08-01), Miyoshi et al.
patent: 4667025 (1987-05-01), Miyoshi et al.
patent: 4668777 (1987-05-01), Caruthers et al.
patent: 4711955 (1987-12-01), Ward et al.
patent: 4757141 (1988-07-01), Fung et al.
patent: 4849513 (1989-07-01), Smith et al.
patent: 4855225 (1989-08-01), Fung et al.
patent: 4948882 (1990-08-01), Ruth
patent: 5015733 (1991-05-01), Smith et al.
patent: 5118800 (1992-06-01), Smith et al.
patent: 5118802 (1992-06-01), Smith et al.
patent: 5162654 (1992-11-01), Kostichka et al.
patent: 5171534 (1992-12-01), Smith et al.
patent: 5212304 (1993-05-01), Fung et al.
patent: 5258538 (1993-11-01), Fung et al.
patent: 5260433 (1993-11-01), Engelhardt et al.
patent: 5366860 (1994-11-01), Bergot et al.
patent: 5541313 (1996-07-01), Ruth
Maxan & Gilbert, Methods in Enzymology, v. 65, 499-599 (1980).
Prober et al, Science, v. 238, Oct. 16, 1987, pp. 336-341.
Brumbaugh et al, Proc. Natl. Acad. Sci, v. 85, Aug. 1988, pp. 5610-5614.
Matthews et al, Analytical Biochemistry, v. 169, (1988) 1-25.
Sanger et al, Proc. Natl. Acad. Sci. 74(12):5463 (1977).
Akusjarvi et al., "Nucleotide sequence at the junction between the coding region of the adenovirus 2 hexon messenger RNA and its leader sequence" Proc. Natl. Acad. Sci. USA (1978) 75(12):5822-5826.
Kitamura et al., "Sequence of 1060 3'-terminal nucleotides of poliovirus RNA as determined by a modification of the dideoxynucleotide method" Proc. Natl. Acad. Sci. USA (1980) 77(6):3196-3200.
Leary et al., "Rapid and sensitive colorimetric method for visualizing biotin-labeled DNA probes hybridized to DNA or RNA immobilized on nitrocellulose: Bio-blots" Proc. Natl. Acad. Sci. USA (1983) 80:4045-4049.
Takanami et al., "DNA Sequence Analysis Manual" Kodansya Co. Ltd., Nov. 1983, pp. 49-54.
Takanami et al., "DNA Sequence Analysis Manual" Kodansya Co. Ltd., Nov. 1983, pp. 49-54. (English Translation).
Draper, "Attachment of reporter groups to specific, selected cytidine residues in RNA using a bisulfite-catalyzed transamination reaction" Nucleic Acids Research (1984) 12(2):989-1002.
Fourrey et al., "Preparation and phosphorylation reactivity at N-nonacylated nucleoside phosphoramidites" Chemical Abstracts (1986) 104:130215a.
Tanaka et al., "Synthesis and properties of phosphoramidite derivatives of modified nucleosides" Chemical Abstracts (1987) 106:33420x.
Chu et al., "Derivatization of unprotected polynucleotides" Nucleic Acids Research (1983) 11:6513-6529.
Brumbaugh et al., "Continuous, on-line DNA sequencing using oligodeoxynucleotide primers with multiple fluorophores" Proc. Natl. Acad. Sci. USA (1988) 85:5610-5614.
Matthews et al., "Analytical strategies for the use of DNA probes" Analytical Biochem. (1988) 169:1-25.
Prober et al., "A system for rapid DNA sequencing with fluorescent chain-terminating dideoxynucleotides" Science (1987) 238:336-341.
Bouloy, M. et al., "Cap and internal nucleotides of reovirus mRNA primers are incorporated into influenza viral complementary RNA during transcription in vitro" Journal of Virology (1979) 32(3):895-904.
Plotch, S.J. et al., "Transfer of 5'-terminal cap of globin mRNA to influenza viral complementary RNA during transcription in vitro" Proceedings the National Academy of Science USA (1979) 76(4):1618-1622.
Tsuchiya, M., "Fluorescence labelling of DNA and development of a real-time fluorescence detection gel electrophoresis method." Abstract for Master's Thesis, Saitama University (1983).
Kagakukai ed., "Fluorescence tagging" Biochemistry Experiments Course 2, Nucleic Acid Chemistry III (1977) pp. 299-317.
Yang et al., "Studies of transfer RNA tertiary structure by singlet-singlet energy transfer" Proc. Natl. Acad. Sci. USA (1974) 71(7):2838-2842.
Yoshioka et al., "Method for determining a DNA nucleotide sequence I" Cell Engineering (1982) 1(1):93-101.
Lee et al., "Transcription of adenovirus type 2 genes in a cell-free system: Apparent heterogeneity of initiation at some promoters" Molecular and Cellular Biology (1981) 1(7):635-651.
Nomiyama et al., "Method for determining a DNA nucleotide sequence II" Cell Engineering (1982) 1(2):105-115.
Draper et al., "A method for linking fluorescent labels to polynucleotides: Application to studies of ribosome-ribonucleic acid interactions" Biochemistry (1980) 19(9):1774-1781.
Bauman et al., "A new method for fluorescence microscopical localization of specific DNA sequences by in situ hybridization of fluorochrome-labelled RNA" Exp. Cell Res. (1980) 128:485-490.
Douglass et al., "Methods and instrumentation for fluorescence quantitation of proteins and DNA's in electrophoresis gels at the 1 ng level" Electrophoresis '78 ed. N. Catsimpoolas (1978) pp. 155-165.
Cotrufo et al., "High sensitivity method for fluorofore detection in gradient polyacrylamide slab gels through excitation by laser light: Application to glycoproteins stained with concanavalin A-fluorescein isothiocyanate" Anal. Biochem. (1983) 134;313-319.
Gilbert, "DNA-sequenzierung und gen-struktur (Nobel-Vortrag)" Angewandte Chemie (1981) 93:1037-1046. The undersigned has also enclosed a copy of the English version, as published in Science (1981) 214:1305-1312, based on the same Nobel Lecture.
Maxam et al., "A new method for sequencing DNA" Proc. Natl. Acad. Sci. USA (1977) 74:560-564.
Maxam et al., "Sequencing end-labeled DNA with base-specific channel cleavages" Meth. Enzymol. (1980) 65:499-559.
Gill et al., "New developments in chemiluminescence research" Aldrichimica Acta (1983) 16:59-61.
Mellbin, "A chemiluminescence detector for trace determination of fluorescent compounds" J. Liq. Chrom. (1983) 6:1603-1616.
Sanger et al., "DNA sequencing with chain-terminating inhibitors" Proc. Natl. Acad. Sci. USA (1977) 74:5463-5467.
Smith et al, "DNA sequence analysis by primed synthesis" Meth. Enzymol. (1980) 65:560-580.
Smith et al., "The synthesis of oligonucleotides containing an aliphatic amino group at the 5' terminus: Synthesis of fluoroscent DNA primers for use in DNA sequence analysis" Nucl. Acids. Res. (1985) 13:2399-2412.
Barrio, J.R. et al., "Fluorescent adenosine and cytidine derivatives" Biochem. Biophys. Res. Comm. (1972) 46(2):597-604.
Eshaghpour, H et al., "Specific chemical labeling of DNA fragments" Nucl. Acids Res. (1979) 7(6):1485-1495.
Fiddes et al., "Isolation, cloning and sequence analysis of cDNA for the .alpha.-subunit of human chorionic gonadotropin" Nature (1979) 281:351-356.
Guo et al., "New rapid methods for DNA sequencing based on exonuclease III digestion followed by repair synthesis" Chem. Abstr. (1982) 97:162 (abstract no. 1521k).
Husimi, Y., "DNA Sequencer" Oyo Buturi (1982) 51(12):1400. An English translation of the a

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