Chemistry: molecular biology and microbiology – Measuring or testing process involving enzymes or... – Involving nucleic acid
Patent
1996-06-06
1998-07-14
Zitomer, Stephanie W.
Chemistry: molecular biology and microbiology
Measuring or testing process involving enzymes or...
Involving nucleic acid
536 243, 536 2433, 935 8, 935 77, 935 78, C12Q 168, C07H 2104
Patent
active
057802335
ABSTRACT:
An improved nucleic acid hybridization process is provided which employs a modified oligonucleotide and improves the ability to discriminate a control nucleic acid target from a variant nucleic acid target containing a sequence variation. The modified probe contains at least one artificial mismatch relative to the control nucleic acid target in addition to any mismatch(es) arising from the sequence variation. The invention has direct and advantageous application to numerous existing hybridization methods, including, applications that employ, for example, the Polymerase Chain Reaction, allele-specific nucleic acid sequencing methods, and diagnostic hybridization methods.
REFERENCES:
Iitia et al. Biotechniques 17(3):566-573 Sep. 1994.
Bergstrom, et al., "Synthesis, Structure, and Deoxyribonucleic Acid Sequencing with a Universal Nucleoside: 1-(2'-Deoxy-.beta.-D-ribofuranosyl)-3-nitropyrrole," J. Am. Chem. Soc. vol. 17, No. 4: 1201-1209 (1995).
Breslauer, et al., "Predicting DNA duplex stability from the base sequence," Proc. Natl. Acad. Sci. USA vol. 83:3746-3750 (1986).
Conner, et al., "Detection of sickle cell .beta..sup.s -globin allele by hybridization with synthetic oligonucleotides," Proc. Natl. Acad. Sci. USA vol. 80:278-282 (1983).
Doktycz, et al., "Optical Melting of 128 Octamer DNA Duplexes," The Journal of Biological Chemistry vol. 270:8439-8445 (1995).
Ebel et al., "Very Stable Mismatch Duplexes: Structural and Thermodynamic Studies on Tandem G.cndot.A Mismatches in DNA," Biochemistry 31:12083-12086(1992).
Ikuta, et al., "Dissociation kinetics of 19 base paired oligonucleotide-DNA duplexes containing different single mismatched base pairs," Nucleic Acids Research vol. 15:797-811 (1987).
Loakes, et al., "5-Nitroindole as an universal base analogue," Nucleic Acids Research vol. 22:4039-4043 (1994).
McGraw et al., "Sequence-Dependent Oligonucleotide-Target Duplex Stabilities: Rules from Empirical Studies with a Set of Twenty-Mers," Bio Techniques vol. 8:674-678 (1990).
Milburn, Sue, Ph.D., "Purify mRNA Rapidly with High Yield," Ambion vol. 3:1-12 (1996).
Nichols, et al., "A universal nucleoside for use at ambiguous sites in DNA primers," Nature, 369:492-493 (1994).
Wallace, et al., "The use of synthetic oligonucleotides as hybridization probes. II. Hybridization of oligonucleotides of mixed sequence to rabbit .beta.-globin DNA," Nucleic Acids Research vol. 9:879-894 (1981).
Werntges, et al., "Mismatches in DNA double strands: thermodynamic parameters and their correlation to repair efficiencies," Nucleic Acids Research, vol. 14, No. 9:3773-3790 (1986).
Guo Zhen
Smith Lloyd M.
Shoemaker Debra
Wisconsin Alumni Research Foundation
Zitomer Stephanie W.
LandOfFree
Artificial mismatch hybridization does not yet have a rating. At this time, there are no reviews or comments for this patent.
If you have personal experience with Artificial mismatch hybridization, we encourage you to share that experience with our LandOfFree.com community. Your opinion is very important and Artificial mismatch hybridization will most certainly appreciate the feedback.
Profile ID: LFUS-PAI-O-1880553