Arrays of nucleic acid probes on biological chips

Chemistry: molecular biology and microbiology – Measuring or testing process involving enzymes or... – Involving nucleic acid

Reexamination Certificate

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C422S050000, C422S068100, C536S024300

Reexamination Certificate

active

07115364

ABSTRACT:
The invention provides chips of immobilized probes, and methods employing the chips, for comparing a reference polynucleotide sequence of known sequence with a target sequence showing substantial similarity with the reference sequence, but differing in the presence of e.g., mutations.

REFERENCES:
patent: 4656127 (1987-04-01), Mundy
patent: 4683195 (1987-07-01), Mullis et al.
patent: 5002867 (1991-03-01), Macevicz
patent: 5143854 (1992-09-01), Pirrung et al.
patent: 5202231 (1993-04-01), Drmanac et al.
patent: 5273632 (1993-12-01), Stockham et al.
patent: 5472842 (1995-12-01), Stokke et al.
patent: 5527681 (1996-06-01), Holmes
patent: 5620848 (1997-04-01), Levine et al.
patent: 5670314 (1997-09-01), Christman et al.
patent: 5690894 (1997-11-01), Pinkel et al.
patent: 5700637 (1997-12-01), Southern
patent: 5837832 (1998-11-01), Chee et al.
patent: 5861242 (1999-01-01), Chee et al.
patent: 6090566 (2000-07-01), Vogelstein et al.
patent: 6309823 (2001-10-01), Cronin et al.
patent: 6468744 (2002-10-01), Cronin et al.
patent: 2003/0165823 (2003-09-01), Cronin et al.
patent: 2003/0165830 (2003-09-01), Cronin et al.
patent: 463 395 (1992-01-01), None
patent: 512 342 (1992-11-01), None
patent: WO 89/10977 (1989-11-01), None
patent: WO 89/11548 (1989-11-01), None
patent: WO 90/00626 (1990-01-01), None
patent: WO 90/03382 (1990-04-01), None
patent: WO 91/10745 (1991-07-01), None
patent: WO 92/10092 (1992-06-01), None
patent: WO 92/10588 (1992-06-01), None
patent: WO 93/17126 (1993-09-01), None
patent: WO 94/03638 (1994-02-01), None
patent: WO 95/00530 (1995-01-01), None
patent: WO 95/11995 (1995-05-01), None
patent: WO 95/26973 (1995-10-01), None
Chee et al., “Towards sequencing mitochondrial DNA polymorphisms by hybridization to a custom oligonucleotide probe array,” poster,American Society of Human Genetics, 43rd Annual Meeting, Oct. 5-9, 1993, New Orleans, LA (abstract).
Chee et al., “Genetic analysis by hybridization to sequence-specific DNA arrays,” poster,American Society of Human Genetics, 43rd Annual Meeting, Oct. 5-9, 1993, New Orleans, LA (abstract).
Chee et al., “Sequence analysis by hybridization: the human mitochondrial genome on a chip,” poster and slide presentation,Genome Sequencing and Analysis Conference V, Sep. 17-21, 1994, Hilton Head, SC (abstract).
Chee et al., “Sequencing mitochondrial DNA polymorphisms by hybridization,” slide presentation,American Society of Human Genetics 44th Annual Meeting, Oct. 18-22, 1994, Montreal, Quebec (abstract).
Chee, “Resequencing DNA by hybridization to oligonucleotide arrays,” slide presentation,Western Biotech Conference, Oct. 18-21, 1995, San Diego, CA (abstract).
Cronin et al., “Hybridization to arrays of oligonucleotides,” poster,Nucleic Acids in Medical Applications Conferencesponsored by AACC, Jan., 1993, Cancun, Mexico (abstract).
Cronin et al., “Detection of cystic fibrosis gene mutations by hybridization to GeneChip™ probe arrays,” poster,Nucleic Acids in Medical Applications Conferencesponsored by AACC, Nov., 1993, Cancun, Mexico (abstract).
Cronin et al., “GeneChip™ screening assay for cystic fibrosis mutations,” poster,American Society of Human Genetics Meeting, Oct., 1994, Montreal, Canada (abstract).
Cronin et al., “Detecting cystic fibrosis mutations by hybridization to DNA probe arrays,” slide presentation,UCSF School of Medicine Symposium: Molecular Approaches to Laboratory Diagnosis, Feb., 1995 (abstract).
Elder, “Analysis of DNA oligonucleotide hybridization data by maximum entropy,”Maximum Entropy and Bayesian Methods, pp. 1-10, Paris (1992).
Lipschutz, “Likelihood DNA sequencing by hybridization,”J. of Biomolecular Structure&Dynamics, 11:637-653 (1993).
Lipshutz, “Oligonucleotide arrays for hybridization analysis,” poster,Genome Sequencing and Analysis Conference V, Oct. 23-27, 1993, Hilton head, SC (abstract).
Lobban et al., “DNA chips for genetic analysis,” poster, Genome Sequencing and Analysis Conference V, Oct. 23-27, 1993, Hilton Head, SC (abstract).
Lockhart et al., “DNA sequencing by hybridization on high density probe arrays: enzymatic enhancement and sequence reconstruction,” poster,American Society of Human Genetics 44th Annual Meeting, Oct. 18-22, 1994, Montreal, Quebec (abstract).
Luo et al., “Cellular protein modulates effects of human immunodeficiency virus type 1 rev,”J. Virol. 68:3850-3856 (1994).
Maxam et al., “A new method for sequencing DNA,”Proc. Natl. Acad. Sci. USA, 74:560-564 (1977).
Maxam et al., “Sequencing end-labeled DNA with base-specific chemical cleavages,”Methods in Enzymology, 65:499-560 (1980).
Miyada et al., “Detection of cystic fibrosis mutations in a GeneChip™ assay format,” poster,American Society of Human Genetics 44th Annual Meeting, Oct., 1994, Montreal, Quebec (abstract).
Querat et al., “Nucleotide sequence analysis of SA-OMVV, a Visna-related ovine lentivirus: phylogenetic history of lentiviruses,”Virology, 175:434-447 (1990).
Ratner et al., “Complete nucleotide sequence of the AIDS virus, HTLV-III,”Nature, 313:277-284 (1985).
Sambrook et al., “Molecular cloning,” Cold Spring Harbor Press, pp. 1145-1147 (1989).
Sanger et al., “DNA sequencing with chain-terminating inhibitors,”Proc. Natl. Acad. Sci. USA, 74:5463-5467 (1977).
Southern et al., “Analyzing and comparing nucleic acid sequences by hybridization to arrays of oligonucleotides: evaluation using experimental models,”Geonimcs, 13:1008-1017 (1992).
Stratagene 1988 Catalog, “Gene Characterization Kits,” p. 39.
Wain-Hobson et al., “Nucleotide sequence of the AIDS virus, LAV,”Cell, 40:9-17 (1985).
Chee et al., “Accessing Genetic Information with High Density DNA Arrays,”Science, 274:610-614 (1996).
Chee et al., “A new method for rapid sequence analysis detection of HIV reverse transcriptase mutations,” slide presentation,HIV Drug Resistance Third International Workshop, Aug. 2-5, 1994, Kauai, HI.
Cocco et al., “Lack of evidence for a role of the myelin basic protein gene in multiple sclerosis susceptibility in Sardinian patients,”J. Neurology, 249(11):1552-1555 (2002).
Cronin et al., “Cystic fibrosis mutation detection by hybridization to light-generated DNA probe arrays,”Human Mutation, 7(3):244-255 (1996).
Finch et al., “PCR/RFLP Assay for Copy Number of Mutant and Wild-Type Alleles,”BioTechniques, 21:1055-1060 (1996).
Gonzales et al., “Pharmacogenetic Phenotyping and Genotyping, Present Status and Future Potential,”Clin. Pharmacokinet, 26(1):59-70 (1994).
Hacia et al., “Detection of Heterozygous Mutations in BRCA 1 Using High Density Oligonucleotide Arrays and Two-Colour Fluorescence Analysis,”Nature Genetics, 14:441-447 (1996).
Hagstrom et al., “Maximum likelihood genetic sequence reconstruction from oligo content,” fromArgonne Nat'l Laboratory Preprint MCS-P309-0592(1992).
Laan et al., “Solid-Phase Minisequencing Confirmed by FISH Analysis in Determination of Gene Copy Number,”Human Genetics, 96:275-280 (1995).
Lipshutz et al., “Using Oligonucleotide Probe Arrays to Access Genetic Diversity,”Biotechniques, 19(3):442-447 (1995).
Rudert et al., “Rapid Detection of Sequence Variations Using Polymers of Specific Oligonucleotides,”Nuc. Acids Res., 20(5):1146 (1992).
Stickland et al., “Quantification of Oncogene Dosage in Tumors by Simultaneous Dual Label Hybridization,”Oncogene, 8:223-227 (1993).
Strachan et al.,Human Molecular Genetics, pp. 466-471, Bios Scientific Publishers Limited, Oxford OX4 1RE, UK, (1996).
Takeda et al., “An increasedNM23H1copy number may be a poor prognostic factor independent of LOH on lp in neuroblastomas,”Br. J. Cancer, 74:1620-1626 (1996).
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