Analysis of methylation using nucleic acid arrays

Chemistry: molecular biology and microbiology – Measuring or testing process involving enzymes or... – Involving nucleic acid

Reexamination Certificate

Rate now

  [ 0.00 ] – not rated yet Voters 0   Comments 0

Details

C536S023100, C536S024300

Reexamination Certificate

active

07901882

ABSTRACT:
Arrays for genome-wide analysis of methylation are disclosed. In a preferred aspect arrays comprising a plurality of probes complementary to a plurality of identified CpG islands in the human, mouse and rat genome are disclosed. The arrays may be used to detect methylation within CpG islands in samples from human, mouse and rat genomes.

REFERENCES:
patent: 5118604 (1992-06-01), Weissman et al.
patent: 5217889 (1993-06-01), Roninson et al.
patent: 5474796 (1995-12-01), Brennan
patent: 5576204 (1996-11-01), Blanco
patent: 5580730 (1996-12-01), Okamoto
patent: 5710000 (1998-01-01), Sapolsky et al.
patent: 5786146 (1998-07-01), Herman et al.
patent: 5871917 (1999-02-01), Duffy
patent: 5912147 (1999-06-01), Stoler et al.
patent: 5942609 (1999-08-01), Hunkapiller et al.
patent: 6017701 (2000-01-01), Sorge et al.
patent: 6017704 (2000-01-01), Herman et al.
patent: 6156501 (2000-12-01), McGall et al.
patent: 6200756 (2001-03-01), Herman et al.
patent: 6214556 (2001-04-01), Olek et al.
patent: 6251594 (2001-06-01), Gonzalgo et al.
patent: 6265171 (2001-07-01), Herman et al.
patent: 6300071 (2001-10-01), Vuylsteke et al.
patent: 6309823 (2001-10-01), Cronin et al.
patent: 6331393 (2001-12-01), Laird et al.
patent: 6333155 (2001-12-01), Lockhart et al.
patent: 6383754 (2002-05-01), Kaufman et al.
patent: 6509160 (2003-01-01), Sapolsky et al.
patent: 6514698 (2003-02-01), Lopez et al.
patent: 6562569 (2003-05-01), Dale
patent: 6582908 (2003-06-01), Fodor et al.
patent: 6605432 (2003-08-01), Huang
patent: 6613511 (2003-09-01), Schmidt et al.
patent: 6649347 (2003-11-01), Luo et al.
patent: 6677121 (2004-01-01), Lizardi et al.
patent: 6713258 (2004-03-01), Kilian
patent: 6858388 (2005-02-01), Markowitz et al.
patent: 6884586 (2005-04-01), Van Ness et al.
patent: 6916621 (2005-07-01), Shah
patent: 6936419 (2005-08-01), Berlin
patent: 6958217 (2005-10-01), Pedersen et al.
patent: 6960436 (2005-11-01), Cottrell
patent: 6964847 (2005-11-01), Englert
patent: 6979728 (2005-12-01), Bradley et al.
patent: 7108976 (2006-09-01), Jones et al.
patent: 7112404 (2006-09-01), Laird et al.
patent: 7118868 (2006-10-01), Berlin
patent: 7132240 (2006-11-01), Luo et al.
patent: 7144701 (2006-12-01), Huang
patent: 7153671 (2006-12-01), Berlin
patent: 7186512 (2007-03-01), Martienssen et al.
patent: 7195870 (2007-03-01), Olek et al.
patent: 7214485 (2007-05-01), Belinsky
patent: 7229759 (2007-06-01), Olek et al.
patent: 7247428 (2007-07-01), Makrigiorgos et al.
patent: 7285394 (2007-10-01), Lofton-Day et al.
patent: 7368239 (2008-05-01), Zon
patent: 7405040 (2008-07-01), Olek et al.
patent: 7407749 (2008-08-01), Berlin et al.
patent: 7425415 (2008-09-01), Pfeifer et al.
patent: 7524629 (2009-04-01), Olek et al.
patent: 7611869 (2009-11-01), Fan
patent: 7781161 (2010-08-01), Sidransky
patent: 7794929 (2010-09-01), Baylin et al.
patent: 2001/0046669 (2001-11-01), McCobmie et al.
patent: 2001/0053519 (2001-12-01), Fodor et al.
patent: 2002/0137086 (2002-09-01), Olek et al.
patent: 2002/0197639 (2002-12-01), Shia et al.
patent: 2003/0036081 (2003-02-01), Adorjan et al.
patent: 2003/0096289 (2003-05-01), Suzuki et al.
patent: 2003/0099997 (2003-05-01), Bestor
patent: 2003/0104464 (2003-06-01), Berlin et al.
patent: 2003/0143606 (2003-07-01), Olek et al.
patent: 2003/0148326 (2003-08-01), Olek et al.
patent: 2003/0148327 (2003-08-01), Olek et al.
patent: 2003/0152950 (2003-08-01), Garner et al.
patent: 2003/0157510 (2003-08-01), Olek
patent: 2003/0162194 (2003-08-01), Olek et al.
patent: 2003/0170689 (2003-09-01), Stamatoyannapoulos et al.
patent: 2003/0175908 (2003-09-01), Linnarsson et al.
patent: 2003/0212455 (2003-11-01), Van Steensel et al.
patent: 2003/0215842 (2003-11-01), Sledziewski et al.
patent: 2004/0023230 (2004-02-01), Olek et al.
patent: 2004/0029128 (2004-02-01), Cottrell et al.
patent: 2004/0038254 (2004-02-01), Peoples et al.
patent: 2004/0048275 (2004-03-01), Guldberg
patent: 2004/0072197 (2004-04-01), Jones et al.
patent: 2004/0077074 (2004-04-01), Ackley et al.
patent: 2004/0086944 (2004-05-01), Grigg et al.
patent: 2004/0102905 (2004-05-01), Adorjan et al.
patent: 2004/0146868 (2004-07-01), Cottrell et al.
patent: 2004/0203048 (2004-10-01), Tran
patent: 2004/0234960 (2004-11-01), Olek et al.
patent: 2004/0248090 (2004-12-01), Olek et al.
patent: 2004/0248171 (2004-12-01), Palmisano
patent: 2005/0009059 (2005-01-01), Shapero et al.
patent: 2005/0021240 (2005-01-01), Berlin et al.
patent: 2005/0064428 (2005-03-01), Berlin
patent: 2005/0196792 (2005-09-01), Fodor et al.
patent: 2005/0227230 (2005-10-01), Carroll
patent: 2005/0233340 (2005-10-01), Barrett
patent: 2005/0282157 (2005-12-01), Olek
patent: 2006/0110741 (2006-05-01), Asai
patent: 2006/0134650 (2006-06-01), Gunderson
patent: 2006/0183115 (2006-08-01), Wang
patent: 2006/0188986 (2006-08-01), Millar
patent: 2009/0023137 (2009-01-01), Van Der Zee et al.
patent: 1344832 (2003-09-01), None
patent: 1312685 (2003-11-01), None
patent: 1362929 (2003-11-01), None
patent: 1568786 (2005-08-01), None
patent: WO 00/26401 (2000-05-01), None
patent: WO 01/38565 (2001-05-01), None
patent: WO 01/77377 (2001-10-01), None
patent: WO 02/00927 (2002-01-01), None
patent: WO 02/04686 (2002-01-01), None
patent: WO 02/18649 (2002-03-01), None
patent: WO 02/34942 (2002-05-01), None
patent: WO 02/083705 (2002-10-01), None
patent: WO 03/023065 (2003-03-01), None
patent: WO 03/025215 (2003-03-01), None
patent: WO 03/027259 (2003-04-01), None
patent: WO 03/048732 (2003-06-01), None
patent: WO 03/064682 (2003-08-01), None
patent: WO 03/076666 (2003-09-01), None
patent: WO 03/080862 (2003-10-01), None
patent: WO 03/087774 (2003-10-01), None
patent: WO 2004/048555 (2004-06-01), None
patent: WO 2004/096825 (2004-11-01), None
patent: WO 2005/021778 (2005-03-01), None
patent: WO 2005/021802 (2005-03-01), None
patent: WO 2005/033332 (2005-04-01), None
Herman et al., Methylation-specific PCR: a novel PCR assay for methylation status of CpG islands PNAS 93(18): 9821-9826 (1996).
Huang et al., Methylation profiling of CpG islands in human breast cancer cells. Human Molecular Genetics 8 (3) :459-470 (1999).
Eads et al., MethylLight: a high-throughput assay to measure DNA methylation. Nucleic Acids Research 28(8) : e32 (2000).
Yan et al., CpG island arrays: an application toward deciphering epigenetic signatures of breast cancer. Clinical Cancer Research 6(4): 1432-8 (2000).
Hatada et al. A microarray-based method for detecting methylated loci. Journal of Human Genetics, 47(8) : 448-51(2002).
Liang et al., Identification of DNA methylation differences during tumorigenesis by methylation-sensitive arbitrarily primed polymerase chain reaction. Methods 27(2) : 150-155 (2002).
Wei et al., Methylation microarray analysis of late-stage ovarian carcinomas distinguishes progression-free survival in patients and identifies candidate epigenetic markers. Clinical Cancer Research 8(7) : 2246-2252(2002).
Adorjan et al., Tumour class prediction and discovery by microarray-based DNA methylation analysis. Nucleic Acids Research 30 (5) :e21/1-e21/9 (2002).
Chen et al., Methylation target array for rapid analysis of CpG island hypermethylation in multiple tissue genomes. Am. J. of Pathlogy 163 (1) : 37-45 (2003).
Yan et al., Dissecting complex epigenetic alterations in breast cancer using CpG island microarrays. Cancer Research 61 : 8375-8380 (2001).
Adorjan et al., “Tumour class prediction and discovery by microarray-based DNA methylation analysis,”Nucleic Acids Research, 30(5):e21/1-e21/9 (2002).
Bernstein et al., “Genomic maps and comparative analysis of histone modifications in human and mouse,”Cell, 120(2):169-81 (Jan. 2005).
Chen et al., “Methylation target array for rapid analysis of CpG island hypermethylation in multiple tissue genomes,”Am. J. of Pathology, 163(1):37-45 (2003).
Eads et al., “MethylLight: a high-throughput assay to measure DNA methylation,”Nucleic Acids Research, 28(8):e32 (2000).
Faruqi et al., “High-throughput genotyping of single nucleotide polymorphisms with rolling circle amplification,”BMC Genomics,

LandOfFree

Say what you really think

Search LandOfFree.com for the USA inventors and patents. Rate them and share your experience with other people.

Rating

Analysis of methylation using nucleic acid arrays does not yet have a rating. At this time, there are no reviews or comments for this patent.

If you have personal experience with Analysis of methylation using nucleic acid arrays, we encourage you to share that experience with our LandOfFree.com community. Your opinion is very important and Analysis of methylation using nucleic acid arrays will most certainly appreciate the feedback.

Rate now

     

Profile ID: LFUS-PAI-O-2649710

  Search
All data on this website is collected from public sources. Our data reflects the most accurate information available at the time of publication.