Amplification of midivariant DNA templates

Organic compounds -- part of the class 532-570 series – Organic compounds – Carbohydrates or derivatives

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435 6, 435 911, 435 5, 935 77, 935 78, C07H 2104, C12P 1934, C12Q 170, C12Q 168

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059590955

ABSTRACT:
New methods are provided for the amplification of a midivariant DNA containing an inserted target specific nucleic acid sequence(s) to enable detection of the presence of a target nucleic acid sequence in a test sample. One method employs midivariant DNA as a template for the synthesis of RNA catalyzed by QB replicase. Two midivariant DNA/probe conjugates including a nonreplicable portion of midivariant DNA and a target specific nucleic acid sequence (probe) are described. An amplification method including the steps of hybridization and ligation of the midivariant DNA/probe conjugates followed by replication of the DNA template has enabled detection of less than 200 template molecules. In a modified amplification method one of the midivariant DNA/probe conjugates further includes a RNA polymerase promoter sequence to enable transcription of the midivariant DNA template into RNA. The sequential ligation-transcription-replication method enables the detection of a single template molecule. The detectable molecule(s) are indicative of the presence of the target nucleic acid sequences in the test sample.

REFERENCES:
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patent: 5112734 (1992-05-01), Kramer et al.
Lizardi et al; Bio/Technology 6(10):1197-1202; (Oct. 1988).
Cahill et al, Clin. Chem 37(9), 1482-1485 (1991) "Polymerase Chain Reaction and QB Replicase Amplification".
Feix et al, Febs Lett 63(1), 201-204 (Mar., 1976).
Kramer et al, Nature 339, 401-402 (Jun. 1, 1989) "Replicable RNA Reporters" .

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