Amino acid sequencing peptides and methods for their use

Details Amino acid sequencing peptides and methods for their use Amino acid sequencing peptides and methods for their use

1996-10-30

1999-07-06

Davenport, Avis M.

Chemistry: analytical and immunological testing

Peptide, protein or amino acid

Amino acid or sequencing procedure

436 86, 514 11, 514 12, 514 13, G01N 3300, A61K 3800, C07K 700

Patent

active

059197099

ABSTRACT:
The present invention provides a novel internal standard for amino acid sequencing which contains a peptide consisting of unnatural amino acid residues, such as ornithine, norvaline, norleucine and .alpha.-aminobutyric acid, that is capable of being sequenced simultaneously with an unknown peptide or protein without interfering with the analysis. The internal standard peptide has an amino acid sequence containing at least two different unnatural amino acid residues having retention times distinct from the corresponding retention times for natural amino acid residues. Information derived from the sequencing of the internal standard allows determination of repetitive yield, lag, N-terminal blockage and discrimination between blank cycles caused by missed injection and blank cycles caused by faulty delivery of chemicals during the sequencer reactions. The present invention further provides novel synthetic control peptides containing from about 3 to 100 natural amino acid residues that are designed for use in monitoring the proper operation of amino acid sequencers and to monitor peptide or protein cleavage reactions. The control peptide, or mixture of control peptides, are designed to obtain data for many or all common, uncommon and difficult to measure amino acids within 15 sequencer cycles and to provide cleavage sites for at least 4 different amino acid cleavage reactants.

REFERENCES:
patent: 5589397 (1996-12-01), Parmalee et al.
Bausch et al. Biopharm. 2(5), 1989, pp. 40-43.
Hunkapiller, Applied Biosystems, Inc., 14, pp. 1-27, Nov. 1985.

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