Chromatographic method for mutation detection using mutation sit

Details Chromatographic method for mutation detection using mutation sit Chromatographic method for mutation detection using mutation sit

1998-08-18

2000-02-22

Marschel, Ardin H.

Chemistry: molecular biology and microbiology

Measuring or testing process involving enzymes or...

Involving nucleic acid

436501, 536 253, 536 254, C12Q 168

Patent

active

060278986

ABSTRACT:
A method for analyzing a sample of double stranded DNA to determine the presence of a mutation therein comprises contacting the sample with a mutation site binding reagent, and chromatographically separating and detecting the product. The chromatographic separation can be performed using Matched Ion Polynucleotide Chromatography, size exclusion chromatography, ion exchange chromatography, or reverse phase chromatography. The mutation site binding reagent can be an enzyme or a non-proteinaceous chemical reagent. In one embodiment, a mutation site binding reagent binds to the site of mutation and alters the chromatographic retention time. In another embodiment, a mutation site binding reagent cleaves at the site of mutation, resulting in an increase in the number of fragments.

REFERENCES:
patent: 4395486 (1983-07-01), Wilson et al.
patent: 4656127 (1987-04-01), Mundy
patent: 4683202 (1987-07-01), Mullis
patent: 5175273 (1992-12-01), Bischofberger et al.
patent: 5217863 (1993-06-01), Cotton et al.
patent: 5376526 (1994-12-01), Brown et al.
patent: 5459039 (1995-10-01), Modrich et al.
patent: 5556750 (1996-09-01), Modrich et al.
patent: 5585236 (1996-12-01), Bonn et al.
patent: 5589329 (1996-12-01), Winkler et al.
patent: 5698400 (1997-12-01), Cotton et al.
patent: 5763178 (1998-06-01), Chirikjian et al.
Brow et al, Cleavase Gragment Length Polymorphism Analysis for Mutation Scanning, Biomedical Products (Sep. 1997).
Chan et al. Sequence Specifity and Biochemical Characterization fo He Rusa Holliday Junction reolvase of Excherichia coli, The Journal of Biological Chemistry, vol. 272, No. 23, Jun. 6, 1997 pp. 14873-14882.
Cotton et al, Reactivity of Cytosine Ans Thymine in Single-Base-Pair Mismatches With Hydrozylamine an Osmium Tetroxide and its Application to the Stury of Mutations, Proc. Natl. Acad. Sci. USA, 85:4397-4401 (Jun. 1988).
Cotton et al, Slowly by Surely Towards Better Scanning for Mutations, TIG, vol. 13 No. 2: 43-46 (Feb. 1997).
Ellis et al, Chemical Cleavage of Mismatch: A New Look at an Established Method, Human Mutation, 11: 345-353 (1998).
Gidney et al. 1.10-Phenanthroline and 2,2-Bipyridyl Complexes of Rhodium (iii), JCS Dalton (1972) pp. 2621-2628.
Giraud-Panis et al. T4 Endonuclese VII, Importance of a Histidine-Asparate Cluster Within the Zinc-Binding Domain, The Journal of Biological Chemistry, 271, pp. 33148-33155, 1996.
Holmlin et al., RU(PHEN)2DPPZ2+ Luminescence: Dependence on DNA Sequences and Groove-Binding Agents, Inorg. Chem. (1998)37:29-34.
http://journals.wiley.co . . . 9-7794/abs/v7n3p256.html (Jun. 26, 1998) Citing: Hansen et al, Human Mutation, Vol. 7 No. 3: 256-263 (1996).
hhtp://wsrv.clas.virginia.edu/.about.rjh9u/restdna1.html Restriction Enzyme Cleavage of DNA, (Jun. 26, 1998).
http://www.jbc.org/cgi/c . . . =QID.sub.-- NOT.sub.-- SET&FIRSTINDEX=(Sep. 21, 1998) Citing: J. Biol. Chem., vol. 273 Iss 15: 9202-9207 (Apr. 1998).
http://www.jbc.org/cgi/c . . . =QID.sub.-- NOT.sub.-- SET&FIRSTINDEX=(Sep. 21, 1998) Citing: Taylor et al, Strand Specificity of Nicking of DNA and CHI Sites by RECBCD Ezyme, JBC Online, vol. 270 No. 41: 24459-24467 (Oct. 1995).
Huber et al, High-Resolution Liquid Chromatography of Oligonucleotides on Nonporous Alkylated Styrene-Divinylbenzene Copolymers, Analytical Biochemistry, 212: 351-358 (1993).
Jackson et al, Recognition of DNA Base Mismatches by a Phodium Intercalator, J. Am. Chem. Soc., vol. 119 No. 32: 12986-12987 (1997).
Marshal et al, Detection of Mutations by Cleavage of DNA Heteroduplexes with Bacteriophage Resolvases, Nature Genetics, 9: 177-183 (Feb. 1995).
Marshal et al, Practical Methods of Mutation Detection, Genetics & Development, 6: 275-280 (1998).
Molecular CLoning, A Laboratory Manual, 2nd ed, Cold Spring Harbor Laboratory Press, 1989, pp. 13.2-13.10.
Myers et al, Detection of Single Base Changes in DNA: Ribonuclease Cleavage and Denaturing Gradient Gel Electrophoresis, Genomic Analysis: A Practical Approach, PRL Press, K. Davies, ed. (1988).
Myers et al. Genomic Analysis: A Practical Approach, IRL Press, K. Davis, ed. (1988) pp. 95-158.
Oleykowski et al, Mutation Detection Using a Novel Plant Endonuclease, Nucleic Acids Research, vol. 26 No. 20: 4597-4602 (1998).
Rowley et al., Ultrarapid Mutation Detection by Multiplex, Solid-Phase Chemical Cleavage, Genomics, 30, 574-582, 1995.
Shida et al. Anlysis of Substrate Specificity of the RUVC Holliday Junction Resolvase with Syntheic Holliday Junctions, The Journal of Biological Chemistry, vol. 271, No. 42, Oct. 18, 1996, pp. 26105-26109.
Smith et al. Mutation Detection with MUTH, MUTL, and MUTS Mismatch Repair Proteins, Proc. Natl. Acad. Sci. USA, Genetics, 93, pp. 4374-4379, Apr. 1996.
Stemp et al, Oxidation of Guanine in DNA by Ru(phen)2(dppz)3+ Using the Flash-Quench Technique, J. Am. Chem. Soc., vol. 119 No. 12:2921-2923 (1997).
Taylor, Graham R., Laboratory Methods for the Detection of Mutations and Polymorphisms in DNA, Ch. 9, 18-22, CRC Press, Boca Raton, New York (1997).
Wagner et al. Mutation Detection Using Immobilized Mismatch Binding Protein (MUTS), Nucleic Acids Research, 25, 19, pp. 3944-3948, 1995.
Xu et al. Determining the Site and Nature of DNA Mutations with the Cloned MUTY Mismatch repair Enzyme, Carcinogenesis, vol. 17, No. 2, pp. 321-326, 1996.
Youil et al, Screening for Mutations by Enzyme Mismatch Cleavage with T4 Endomuclease VII, Proc. Natl. Acad. Sci. USA, 92: 87-91 (1995).
Sitlani et al DNA Photocleavage by Phenanthrenequinon Diimine Complexes of Phodium (III): Shape-Selective Recognition and Reaction, J. Am. Chem. Soc. 1992, 114, 2303-2312.

Affiliated with

Also associated with

Rating

Chromatographic method for mutation detection using mutation sit does not yet have a rating. At this time, there are no reviews or comments for this patent.

If you have personal experience with Chromatographic method for mutation detection using mutation sit, we encourage you to share that experience with our LandOfFree.com community. Your opinion is very important and Chromatographic method for mutation detection using mutation sit will most certainly appreciate the feedback.

Rate now

Comments { 0 }

Profile ID: LFUS-PAI-O-519517