Polynucleotides for use tags and tag complements,...

Details Polynucleotides for use tags and tag complements,... Polynucleotides for use tags and tag complements,...

2007-03-28

2009-10-27

Martinell, James (Department: 1634)

Chemistry: molecular biology and microbiology

Measuring or testing process involving enzymes or...

Involving nucleic acid

C536S023100

Reexamination Certificate

active

07608398

ABSTRACT:
A family of minimally cross-hybridizing nucleotide sequences, methods of use, etc. A specific family of 210 24mers is described.

REFERENCES:
patent: 4851331 (1989-07-01), Vary et al.
patent: 4942124 (1990-07-01), Church
patent: 5002867 (1991-03-01), Macevicz
patent: 5149625 (1992-09-01), Church et al.
patent: 5391480 (1995-02-01), Davis et al.
patent: 5604097 (1997-02-01), Brenner
patent: 5635400 (1997-06-01), Brenner et al.
patent: 5654413 (1997-08-01), Brenner et al.
patent: 5830539 (1998-11-01), Yan et al.
patent: 5846719 (1998-12-01), Brenner et al.
patent: 5981176 (1999-11-01), Wallace
patent: 6013445 (2000-01-01), Albrecht et al.
patent: 6040138 (2000-03-01), Lockhart et al.
patent: 6103463 (2000-08-01), Chetverin et al.
patent: 6150095 (2000-11-01), Southern et al.
patent: 6150516 (2000-11-01), Brenner et al.
patent: 6205444 (2001-03-01), Floratos et al.
patent: 6287778 (2001-09-01), Huang et al.
patent: 6322971 (2001-11-01), Chetverin et al.
patent: 6458530 (2002-10-01), Morris et al.
patent: 6472157 (2002-10-01), Di Rienzo et al.
patent: 7226737 (2007-06-01), Pancoska et al.
patent: 2002/0177141 (2002-11-01), Chee et al.
patent: 2005/0191625 (2005-09-01), Kobler et al.
patent: 2008/0014587 (2008-01-01), Pancoska et al.
patent: 0698792 (1996-02-01), None
patent: 0799897 (1997-10-01), None
patent: WO-9317126 (1993-09-01), None
patent: WO-9731256 (1997-08-01), None
patent: WO-0058516 (2000-10-01), None
patent: WO-0159151 (2001-08-01), None
patent: WO-02053728 (2002-07-01), None
patent: WO-02/059354 (2002-08-01), None
patent: WO-02/059355 (2002-08-01), None
Definition of “stringency,” at http://cancerweb.ncl.ac.uk. Dec. 16, 1997. Accessed online Jan. 21, 2008.
Byrd et al. (2000) “The Limitations of MALDI-TOF Mass Spectrometry in the Analysis of Wide Polydisperse Polymers,” Analytical Chemistry 72:4568-4576.
Christof M. Niemeyer et al., “DNA-directed immobilization: Efficient, reversible, and site-selective surface binding of proteins by means ofcovalent DNA-streptavidin conjugates,” Analytical Biochemistry, Mar. 1, 1999, pp. 54-63, vol. 268, No. 1, Academic Press, San Diego, CA, US, XP002176566.
E. Southern et al., “Molecular Interactions on Microarrays,” Nature Genetics, Jan. 1999, pp. 5-9, vol. 21, No. SUPPL, XP000865979.
Breslauer et al., “Predicting DNA duplex stability from the base sequence”, Proc. Natl. Acad. Sci. USA, Jun. 1986, vol. 83, pp. 3746-3750.
Caruthers et al., “Chemical Synthesis of Deoxyliogonucleotides by the Phosphoramidite Method”, Methods in Enzymology, 1987, vol. 154, pp. 287-313.
Church et al., “Multiplex DNA Sequencing”, Science, vol. 240, Apr. 8, 1988, pp. 185-188.
Kwoh et al., “Transcription-based amplification system and detection of amplified human immunodeficiency virus type 1 with a bead-based sandwich hybridization format”, Proc. Natl. Acad. Sci. USA, Feb. 1989, vol. 86, pp. 1173-1177.
Rychlik et al., A computer program for choosing optimal oligonucleotides for filter hybridization, sequencing and in vitro amplification of DNA, Nucleic Acids Research, 1989, vol. 17, No. 21, pp. 8543-8551.
Fodor et al., “Light-directed, Spatially Addressable Parallel Chemical synthesis”, Science, Feb. 15, 1991, vol. 251, pp. 767-773.
Needels et al., “Generation and screening of an oligonucleotide-encoded synthetic peptide library”, Proc. Natl. Acad. Sci. USA, Nov. 1993, vol. 90, pp. 10700-10704.
Ausubel et al., Short Protocols in Molecular Biology, 1993, pp. 15-16 through 15-21.
Alper J., “Drug Discovery on the Assembly Line”, Science, Jun. 3, 1994, vol. 264, pp. 1399-1401.
Nikiforov et al., “Genetic Bit Analysis: a solid phase method for typing single nucleotide polymorphisms”, Nucleic Acids Research, 1994, vol. 22, No. 20, pp. 4167-4175.
Southern et al., “Arrays of complementary oligonucleotide for analyzing the hybridisation behaviour of nucleic acids”, Nucleic Acids Research, 1994, vol. 22, No. 8, pp. 1368-1373.
Hensel et al., “Simultaneous Identification of Bacterial Virulence Genes by Negative Selection”, Science, Jul. 21, 1995, vol. 269, pp. 400-403.
Lyttle et al., “Mutagenesis Using Trinucleotide .beta.-Cyanoethyl Phosphoramidites”, Bio Techniques, 1995, vol. 19, No. 2, pp. 274-280.
Matson et al., “Biopolymer Synthesis on Polypropylene Supports: Oligonucleotide Arrays”, Analytical Biochemistry, 1995, vol. 224, pp. 110-116.
Shoemaker et al., “Quantitative phenotypic analysis of yeast deletion mutants using a highly parallel molecular bar-coding strategy”, Nature Genetics, Dec. 1996, vol. 14, pp. 450-456.
Hermanson et al., Bioconjugate Techniques, Academic Press, 1996, pp. 640-671.
Head et al., “Nested genetic bit analysis (N-GBA) for mutation detection in the p53 tumor suppressor gene”, Nucleic Acids Research, 1997, vol. 25, No. 24, pp. 5065-5071.
Weiler et al., “Hybridisation based DNA screening on peptide nucleic acid (PNA) oligomer arrays”, Nucleic Acids Research, 1997, vol. 25, No. 14, pp. 2792-2799.
Proudnikov et al., “Immobilization of DNA in Polyacrylamide Gel for the Manufacture of DNA and DNA-Oligonucleotide Microchips”, analytical Biochemistry, 1998, vol. 259, pp. 34-41.
Robertson et al., “An Introduction to PCR Primer Design and Optimization of Amplification Reactions”, Methods in Molecular Biology, 1998, vol. 98, pp. 121-154.
Peyret et al., Nearest-Neighbor Thermodynamics and NMR of DNA Sequences with Internal A.sup..A, C.sup..C, G.sup..G, and T.sup..T Mismatches, Biochemistry, 1999, vol. 38, pp. 3468-3477.
Lipshutz et al., “High density synthetic oligonucleotide arrays”, Nature Genetics Supplement, Jan. 1999, vol. 21, pp. 20-24.
Hacia et al., “Design of modified oligodeoxyribonucleotide probes to detect telomere repeat sequences in FISH assays”, Nucleic Acids Research, 1999, vol. 27, No. 20, pp. 4034-4039.
Nguyen et al., “Smoothing of the thermal stability of DNA duplexes by using modified nucleosides and chaotropic agents”, Nucleic Acids Research, 1999, vol. 27, No. 6, pp. 1492-1498.
Iannone et al., “Multiplexed Single Nucleotide Polymorphism Genotyping by Oligonucleotide Ligation and Flow Cytometry”, Cytometry, 2000, vol. 39, pp. 131-140.
Kane et al., “Assessment of the sensitivity and specificity of oligonucleotide (50mer) microarrays”, Nucleic Acids Research, 2000, vol. 28, pp. 4552-4557.
Zammatteo et al., “Comparison between different strategies of covalent attachment of DNA to glass surfaces to build DNA microarrays”, Analytical Biochemistry, 2000, vol. 280, pp. 143-150.
Brenner et al., “Encoded combinatorial chemistry”, 1992, PNAS vol. 89, p. 5381-5383.
Brenner et al., “In vitro cloning of complex mixtures of DNA on microbeads: Physical separation of differentially expressed cDNAs”, Feb. 15, 2000, PNAS, vol. 97, p. 1665-1670.
Brenner et al., “Gene expression analysis by massively parallel signature sequencing (MPSS) on microbead arrays”, Jun. 2000, Nature Biotech., vol. 18, p. 630-634.
Chetverin et al., “Oligonucleotide Arrays: New Concepts and Possibilities”, Nov. 12, 1994, Bio/Technology, vol. 12, p. 1093-1099.
Frutos et al., “Demonstration of a word design strategy for DNA computing on surfaces”, 1997, NAR, vol. 25(23), p. 4748-4757.
Matthews et al., “Analytical Strategies for The Use of DNA Probes”, 1988, Analytical Biochemistry, vol. 169, p. 1-25.
Morgan et al., Simple and Efficient cDNA Capture Utilizing a Short Gene-Specific Probe attached to Magnetic Beads, 1994, Biochem. Soc. Trans., vol. 22, p. 453s.
Ohleymer et al., “Complex Synthetic Chemical Libraries Indexed with Molecular Tags”, Dec. 1993, PNAS, vol. 90, p. 10922-10926.
Sasaki et al., “Construction of a Normalized cDNA Library by Introduction of a Semi-Solid mRNA-cDNA Hybridization System&#x

Affiliated with

Also associated with

Rating

Polynucleotides for use tags and tag complements,... does not yet have a rating. At this time, there are no reviews or comments for this patent.

If you have personal experience with Polynucleotides for use tags and tag complements,..., we encourage you to share that experience with our LandOfFree.com community. Your opinion is very important and Polynucleotides for use tags and tag complements,... will most certainly appreciate the feedback.

Rate now

Comments { 0 }

Profile ID: LFUS-PAI-O-4125283