Data processing: measuring – calibrating – or testing – Measurement system in a specific environment – Biological or biochemical
Reexamination Certificate
2006-01-24
2009-11-17
Zhou, Shubo (Joe) (Department: 1631)
Data processing: measuring, calibrating, or testing
Measurement system in a specific environment
Biological or biochemical
C702S020000, C435S004000, C435S006120, C435S015000, C435S091200, C536S023100, C536S024100
Reexamination Certificate
active
07620502
ABSTRACT:
In silico nucleic acid recombination methods, related integrated systems utilizing genetic operators are used to identify sets of oligonucleotides for in vitro recombination.
REFERENCES:
patent: 4959312 (1990-09-01), Sirokin
patent: 4994379 (1991-02-01), Chang
patent: 5023171 (1991-06-01), Ho et al.
patent: 5043272 (1991-08-01), Hartley et al.
patent: 5066584 (1991-11-01), Gyllensten et al.
patent: 5198346 (1993-03-01), Ladner et al.
patent: 5223409 (1993-06-01), Ladner et al.
patent: 5264563 (1993-11-01), Huse
patent: 5319308 (1994-06-01), Dechene et al.
patent: 5408181 (1995-04-01), Dechene et al.
patent: 5447839 (1995-09-01), Manos et al.
patent: 5512463 (1996-04-01), Stemmer
patent: 5514588 (1996-05-01), Varadaraj
patent: 5519319 (1996-05-01), Smith et al.
patent: 5521077 (1996-05-01), Kholsa et al.
patent: 5565350 (1996-10-01), Kmiec
patent: 5580730 (1996-12-01), Okamoto
patent: 5603793 (1997-02-01), Yoshida et al.
patent: 5605793 (1997-02-01), Stemmer
patent: 5612205 (1997-03-01), Kay et al.
patent: 5650722 (1997-07-01), Smith et al.
patent: 5675253 (1997-10-01), Smith et al.
patent: 5717085 (1998-02-01), Little et al.
patent: 5741691 (1998-04-01), Arnold et al.
patent: 5760012 (1998-06-01), Kmiec et al.
patent: 5763239 (1998-06-01), Short et al.
patent: 5789228 (1998-08-01), Lam et al.
patent: 5789577 (1998-08-01), Geysen
patent: 5811238 (1998-09-01), Stemmer et al.
patent: 5814473 (1998-09-01), Warren et al.
patent: 5824287 (1998-10-01), Short
patent: 5830696 (1998-11-01), Short
patent: 5830721 (1998-11-01), Stemmer et al.
patent: 5834252 (1998-11-01), Stemmer et al.
patent: 5837458 (1998-11-01), Minshull et al.
patent: 5866363 (1999-02-01), Pieczenik
patent: 5869644 (1999-02-01), Shortle et al.
patent: 5876997 (1999-03-01), Kretz
patent: 5912119 (1999-06-01), Radman et al.
patent: 5925749 (1999-07-01), Mathur et al.
patent: 5928905 (1999-07-01), Stemmer et al.
patent: 5939250 (1999-08-01), Short
patent: 5939300 (1999-08-01), Robertson et al.
patent: 5942430 (1999-08-01), Robertson et al.
patent: 5948666 (1999-09-01), Callen et al.
patent: 5958672 (1999-09-01), Short
patent: 5958751 (1999-09-01), Murphy et al.
patent: 5962258 (1999-10-01), Mathur et al.
patent: 5962283 (1999-10-01), Warren et al.
patent: 5965408 (1999-10-01), Short
patent: 5985646 (1999-11-01), Murphy et al.
patent: 6001574 (1999-12-01), Short et al.
patent: 6004788 (1999-12-01), Short
patent: 6030779 (2000-02-01), Short
patent: 6054267 (2000-04-01), Short
patent: 6096548 (2000-08-01), Stemmer
patent: 6107073 (2000-08-01), Chen
patent: 6117679 (2000-09-01), Stemmer
patent: 6125331 (2000-09-01), Toh
patent: 6132970 (2000-10-01), Stemmer
patent: 6153410 (2000-11-01), Arnold et al.
patent: 6159690 (2000-12-01), Borrebaeck et al.
patent: 6188965 (2001-02-01), Mayo et al.
patent: 6269312 (2001-07-01), Mayo et al.
patent: 6323030 (2001-11-01), Stemmer
patent: 6365408 (2002-04-01), Stemmer
patent: 6403312 (2002-06-01), Dahiyat et al.
patent: 6455254 (2002-09-01), Short
patent: 6518065 (2003-02-01), Stemmer
patent: 6537776 (2003-03-01), Short
patent: 6605449 (2003-08-01), Short
patent: 0911396 (1999-04-01), None
patent: 0911396 (1999-05-01), None
patent: 0934999 (1999-08-01), None
patent: WO91/06643 (1991-05-01), None
patent: WO 92/06176 (1992-04-01), None
patent: WO95/15972 (1995-06-01), None
patent: WO 95/22625 (1995-08-01), None
patent: WO96/16073 (1996-05-01), None
patent: WO 96/33207 (1996-10-01), None
patent: WO 97/07205 (1997-02-01), None
patent: WO 97/20078 (1997-06-01), None
patent: WO 97/25410 (1997-07-01), None
patent: WO 97/33957 (1997-09-01), None
patent: WO 97/35957 (1997-10-01), None
patent: WO 97/35966 (1997-10-01), None
patent: WO 97/44361 (1997-11-01), None
patent: WO 97/48416 (1997-12-01), None
patent: WO 97/48717 (1997-12-01), None
patent: WO 97/48794 (1997-12-01), None
patent: WO 98/00526 (1998-01-01), None
patent: WO 98/01581 (1998-01-01), None
patent: WO 98/13485 (1998-04-01), None
patent: WO 98/13487 (1998-04-01), None
patent: WO 98/24799 (1998-06-01), None
patent: WO 98/27230 (1998-06-01), None
patent: WO 98/28416 (1998-07-01), None
patent: WO 98/31837 (1998-07-01), None
patent: WO 98/36080 (1998-08-01), None
patent: WO 98/41622 (1998-09-01), None
patent: WO 98/41623 (1998-09-01), None
patent: WO 98/41653 (1998-09-01), None
patent: WO 98/42832 (1998-10-01), None
patent: WO 98/48034 (1998-10-01), None
patent: WO98/49350 (1998-11-01), None
patent: WO 98/58085 (1998-12-01), None
patent: WO 99/07837 (1999-02-01), None
patent: WO 99/08539 (1999-02-01), None
patent: WO 99/10472 (1999-03-01), None
patent: WO 99/10539 (1999-03-01), None
patent: WO 99/19518 (1999-04-01), None
patent: WO 99/21979 (1999-05-01), None
patent: WO 99/23107 (1999-05-01), None
patent: WO 99/23236 (1999-05-01), None
patent: WO 99/41368 (1999-08-01), None
patent: WO 99/41369 (1999-08-01), None
patent: WO 99/41383 (1999-08-01), None
patent: WO 99/41402 (1999-08-01), None
patent: WO 99/45154 (1999-09-01), None
patent: WO 99/57128 (1999-11-01), None
patent: WO 99/65927 (1999-12-01), None
patent: WO 00/00632 (2000-01-01), None
patent: WO00/23564 (2000-04-01), None
patent: WO 00/37684 (2000-06-01), None
patent: WO00/42559 (2000-07-01), None
patent: WO 00/42560 (2000-07-01), None
patent: WO 00/42561 (2000-07-01), None
patent: WO00/47612 (2000-08-01), None
patent: WO 00/53744 (2000-09-01), None
patent: WO 00/58517 (2000-10-01), None
patent: WO01/61344 (2001-08-01), None
patent: WO01/75767 (2001-10-01), None
patent: WO03/055978 (2003-10-01), None
Martin et al., “Measuring Diversity: Experimental Design of Combinatorial Libraries for Drug Discovery,” J. Med. Chem. 38, 1431-1436, 1995.
Sheridan et al., “Using a Genetic Algorithm to Suggest Combinatorial Libraries,” J. Chem. Inf. Compu. Sci., 35, 310-320, 1995.
D.K. Agrafiotis, “Multiobjective Optimization of Combinatorial Libraries,” IBM J. Res & Dev., vol. 45, No. 3, 545-566, 2001.
Moore et al., “Modeling and Optimization of DNA Recombination,” Elsevier Science Ltd., Computers and Chemical Engineering (2000), 7 Pages.
Moore et al., “Modeling DNA Mutation and Recombination for Directed Evolution Experiments,” J. Theor. Biol. (2000) 205, 483-503.
Wells, “Additivity of Mutational Effects in Proteins,” American Chemical Society, vol. 29, No. 37, pp. 8509-8517, 1990.
Dill, “Additivity Principles in Biochemistry,” Journal of Biological Chemistry, vol. 272, No. 2, pp. 701-704, 1997.
Aita et al., “Analysis of a Local Fitness Landscape with a Model of the Rough Mt. Fuji-Type Landscape: Application to Prolyl Endopeptidase and Thermolysin,” Biopolymers, vol. 54, pp. 64-79, 2000.
Aita et al., “A Cross-Section of the Fitness Landscape of Dihydrofolate Reductase,” Protein Engineering, vol. 14, No. 9, pp. 633-638, 2001.
Distefano et al., “Quantifying B-Sheet Stability by Phage Display,” J. Mol. Biol., 322, pp. 179-188, 2002.
Matsuura et al., “Nonadditivity of Mutational Effects on the Properties of Catalase I and its Application to Efficient Directed Evolution,” Protein Engineering, vol. 11, No. 9, pp. 789-795, 1998.
Benose et al., “Additivity in Protein—DNA Interactions: How Good an Approximation is it?,” Nucleic Acids Research, vol. 30, No. 20, pp. 4442-4451, 2002.
Ufkes et al., “Further Studies on the Structure-Activity Relationships of Bradykinin-Potentiating Peptides,” European Journal of Pharmacology, 79, pp. 155-158, 1982.
Hellberg et al., “The Prediction of Bradykinin Potentiating Potency of Pentapeptides. An Example of a Peptide Quantitative Structure-Activity Relationship,” Acta Chemica Scandinavica B 40, pp. 135-140, 1986.
Stom, et al, “Important Structural Features of 15-Residue Lactoferricin Derivatives and Methods for Improvement of Antimicrobial Activity,” Biochem. Cell Biol. 80: pp. 65-74, 2002.
Eriksson et al., “Peptide QSAR on Substrate P Analogues, Enkephalins and Bradykinins Containing L- and D-Amino Acids,” Acta Chemica Scandinavica, 44, pp.
del Cardayre Stephen
Giver Lorraine J.
Gustafsson Claes
Minshull Jeremy
Patten Phillip A.
Kruse Norman J.
Maxygen Inc.
Weaver Austin Villeneuve & Sampson LLP
Zhou Shubo (Joe)
LandOfFree
Methods for identifying sets of oligonucleotides for use in... does not yet have a rating. At this time, there are no reviews or comments for this patent.
If you have personal experience with Methods for identifying sets of oligonucleotides for use in..., we encourage you to share that experience with our LandOfFree.com community. Your opinion is very important and Methods for identifying sets of oligonucleotides for use in... will most certainly appreciate the feedback.
Profile ID: LFUS-PAI-O-4097328