Chemistry: molecular biology and microbiology – Measuring or testing process involving enzymes or... – Involving nucleic acid
Reexamination Certificate
2007-01-02
2007-01-02
Fredman, Jeffrey (Department: 1637)
Chemistry: molecular biology and microbiology
Measuring or testing process involving enzymes or...
Involving nucleic acid
C435S091200, C536S023100
Reexamination Certificate
active
10374636
ABSTRACT:
An apparatus, compositions and related methods for sequencing a target nucleic acid are described. In certain embodiments, the apparatus is a microfluidic apparatus comprising an input chamber, microchannel, output chamber and a detection unit that is operatively connected to the microchannel. In preferred embodiments, the methods include hybridizing a target nucleic acid to one or more probe libraries, moving the hybridized target nucleic acid past the detector, and detecting bound probes. Probe libraries may comprise oligonucleotides or oligonucleotide analogs, preferably with each probe uniquely labeled. A linear order of labeled probes hybridized to the target nucleic acid can be detected and the target nucleic acid sequence deduced. In preferred embodiments, probe labels are detected by analysis of electron-induced fluorescence of probes labeled with conductive polymers.
REFERENCES:
patent: 5079169 (1992-01-01), Chu et al.
patent: 5202231 (1993-04-01), Drmanac et al.
patent: 5332666 (1994-07-01), Prober et al.
patent: 5436130 (1995-07-01), Mathies et al.
patent: 5545531 (1996-08-01), Rava et al.
patent: 5650489 (1997-07-01), Lam et al.
patent: 5656739 (1997-08-01), Cubicciotti
patent: 5674743 (1997-10-01), Ulmer
patent: 5700637 (1997-12-01), Southern
patent: 5708153 (1998-01-01), Dower et al.
patent: 5776674 (1998-07-01), Ulmer et al.
patent: 5804384 (1998-09-01), Muller et al.
patent: 5821060 (1998-10-01), Arlinghaus et al.
patent: 5846727 (1998-12-01), Soper et al.
patent: 5863727 (1999-01-01), Lee et al.
patent: 5972619 (1999-10-01), Drmanac et al.
patent: 6018041 (2000-01-01), Drmanac et al.
patent: 6025136 (2000-02-01), Drmanac
patent: 6045996 (2000-04-01), Cronin et al.
patent: 6063573 (2000-05-01), Kayyem
patent: 6083695 (2000-07-01), Hardin et al.
patent: 6117643 (2000-09-01), Simpson et al.
patent: 6136543 (2000-10-01), Anazawa et al.
patent: 6188167 (2001-02-01), Endo et al.
patent: 6225068 (2001-05-01), Wolfrum
patent: 6232062 (2001-05-01), Kayyen
patent: 6238871 (2001-05-01), Köster
patent: 6297006 (2001-10-01), Drmanac et al.
patent: 6329209 (2001-12-01), Wagner et al.
patent: 6447724 (2002-09-01), Jensen et al.
patent: 2002/0081588 (2002-06-01), De Lumley-woodyear et al.
patent: WO 99/57321 (1999-11-01), None
patent: WO 00/36152 (2000-06-01), None
patent: WO 01/18246 (2001-03-01), None
patent: WO 01/34302 (2001-05-01), None
Burns, Mark A. et al., “Microfabricated structures for integrated DNA analysis”,Proc. Natl. Acad. Sci.,93:5556-5561, May 1996.
Knight, James B. et al., “Hydrodynamic Focusing on a Silicon Chip: Mixing Nanoliters in Microseconds”,Physical Review Letters,80(17):3863-3866, Apr. 1998.
Machara, Nicholas P. et al., “Efficient detection of single molecules eluting off an optically trapped microsphere”,Bioimaging,6:33-42, 1998.
Chou, Hou-Pu et al., “A Microfabricated device for sizing and sorting DNA molecules”,Proc. Natl. Acad. Sci.,96:11-13, 1999.
Chen, Liaohai et al., “Highly sensitive biological and chemical sensors based on reversible fluorescence quenching in a conjugated polymer”,PNAS,96(22):12287-12292, Oct. 1999.
Meller, Amit et al., “Rapid nanopore discrimination between single polynucleotide molecules”,PNAS,97(3):1079-1084, Feb. 2000.
Rusu, Cristina et al., “Fabrication of micromachined pipettes in a flow channel for single molecule handling of DNA”,Proceedings MEMS,Japan, 2000.
Schafer, Burk et al., “Single molecule DNA restriction analysis in the light microscope”,Single Molecules,1:33-40, 2000.
Chen, Liaohai et al., “Tuning the properties of conjugated polyelectrolytes through surfactant complexation”,Journal American Chemical Society,Apr. 2000.
Baumann, Christoph G. et al., “Stretching of single collapsed DNA molecules”,Biophysical Journal,78:1965-1978, Apr. 2000.
Hegner, Martin, “DNA handles for single molecule experiments”,Single Molecules,1(2):139-144, 2000.
Huser, Thomas et al., “Single chain spectroscopy of conformational dependence of conjugated polymer photophysics”,PNAS,97(21)11187-11191, Oct. 2000.
Tretiak, S. et al., “CEO/semiempirical calculations of UV-visible spectra in conjugated molecules”,Chemical Physics Letters,331:561-568, Dec. 2000.
Blakely , Sokoloff, Taylor & Zafman LLP
Fredman Jeffrey
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