Organic compounds -- part of the class 532-570 series – Organic compounds – Carbohydrates or derivatives
Reexamination Certificate
2008-07-15
2008-07-15
Martinell, James (Department: 1634)
Organic compounds -- part of the class 532-570 series
Organic compounds
Carbohydrates or derivatives
Reexamination Certificate
active
07399850
ABSTRACT:
The present invention provides DNA molecules that constitute fragments of the genome of a plant, and polypeptides encoded thereby. The DNA molecules are useful for specifying a gene product in cells, either as a promoter or as a protein coding sequence or as an UTR or as a 3′ termination sequence, and are also useful in controlling the behavior of a gene in the chromosome, in controlling the expression of a gene or as tools for genetic mapping, recognizing or isolating identical or related DNA fragments, or identification of a particular individual organism, or for clustering of a group of organisms with a common trait.
REFERENCES:
patent: 4801540 (1989-01-01), Hiatt et al.
patent: 5034323 (1991-07-01), Jorgensen et al.
patent: 5204253 (1993-04-01), Sanford et al.
patent: 5231020 (1993-07-01), Jorgensen et al.
patent: 5283184 (1994-02-01), Jorgensen et al.
patent: 5410270 (1995-04-01), Rybicki et al.
patent: 5445943 (1995-08-01), Hoenes
patent: 5538880 (1996-07-01), Lundquist et al.
patent: 5591616 (1997-01-01), Hiei et al.
patent: 5723766 (1998-03-01), Theologis et al.
patent: 5766847 (1998-06-01), Jackle et al.
patent: 5859330 (1999-01-01), Bestwick et al.
patent: 6004804 (1999-12-01), Kumar et al.
patent: 6010907 (2000-01-01), Kmiec et al.
patent: 6329571 (2001-12-01), Hiei
patent: 2002/0023281 (2002-02-01), Gorlach et al.
patent: 2003/0061637 (2003-03-01), Jiang et al.
patent: 2003/0150015 (2003-08-01), Norris et al.
patent: 2004/0034888 (2004-02-01), Liu et al.
patent: 2004/0045049 (2004-03-01), Zhang et al.
patent: 2005/0108791 (2005-05-01), Edgerton
patent: 2005/0223434 (2005-10-01), Alexandrov et al.
patent: 2005/0246785 (2005-11-01), Cook et al.
patent: 2006/0015970 (2006-01-01), Pennell et al.
patent: 2006/0272060 (2006-11-01), Heard et al.
patent: 2007/0022495 (2007-01-01), Reuber et al.
patent: 1 033 405 (2000-09-01), None
patent: 95/35505 (1995-12-01), None
patent: 98/07842 (1998-02-01), None
patent: 99/07865 (1999-02-01), None
patent: 99/58723 (1999-11-01), None
patent: 0135725 (2001-05-01), None
patent: 0215675 (2002-02-01), None
patent: 03013227 (2003-02-01), None
patent: 2004035798 (2004-04-01), None
patent: 2005047516 (2005-05-01), None
U.S. Appl. No. 60/121,700, filed Feb. 25, 1999, Bouckaert et al.
Ahn et al., “Homoeologous relationships of rice, wheat and maize chromosomes”Molecular and General Genetics, 241:483-490 (1993).
Albert et al., “Site-specific integration of DNA into wild-type and mutant lox sites placed in the plant genome”Plant J., 7(4):649-659 (1995).
Alonso-Blanco et al., Methods in Molecular Biology, vol. 82, “Arabidopsis Protocols”, pp. 137-146, J.M. Martinez-Zapater and J. Salinas, eds., c. 1998 by Humana Press, Totowa, NJ.
Ausubel et al. Short Protocols in Molecular Biology 2ndEdition, Current Protocols in Molecular Biology,Greene Publishing, New York (1992), pp. 11-1 through 11-53.
Azpiroz-Leehan et al., “T-DNA insertion mutagenesis inArabidopsis: going back and forth”Trends in Genetics, 13(4):152-156 (1997).
Baerson et al., “Developmental regulation of an acyl carrier protein gene promoter in vegetative and reproductive tissues”Plant Mol. Biol., 22(2):255-267 (1993).
Bateman et al., “Pfam 3.1: 1313 multiple alignments and profile HMMs match the majority of proteins”Nucl. Acids Res., 27(1):260-262 (1999).
Biswas et al. “Transgenic indica rice (Oryza sativaL.) plants obtained by direct gene transfer to protoplasts”J. Biotechnol., 32:1-10, (1994).
Bonner et al., “Reduction in the rate of DNA reassociation by sequence divergence”J. Mol. Biol., 81:123-135 (1973).
Bradshaw et al., “A new vector for recombination-based cloning of large DNA fragments from yeast artificial chromosomes”Nucl. Acids. Res., 23(23):4850-4856 (1995).
Burke et al., “Cloning of large segments of exogenous DNA into yeast by means of artificial chromosome vectors”Science, 236:806-812 (1987).
Burr et al. “Mapping Genes with Recombinant Inbreds”, pp. 249-254. In Freeling, M. and V. Walbot (Ed.), The Maize Handbook, c. 1994 bySpringer-Verlag, New York, Inc.: New York, NY, USA; Berlin Germany.
Burr et al., “Gene mapping with recombinant inbreds in maize”Genetics, 118:519-526 (1988).
Bustos et al., “Regulation of b-glucuronidase expression in transgenic tobacco plants by an A/T-rich,cis-acting sequence found upstream of a French bean b-phaseolin gene”Plant Cell, 1(9):839-853 (1989).
Carels et al., “Compositional properties of homologous coding sequences from plants”J. Mol. Evol., 46:45-53 (1998).
Cerdan et al., “A 146 bp fragment of the tobaccoLhcb*2promoter confers very-low-fluence, low-fluence and high-irradiance responses of phytochrom to a minimal CaMV 35S promoter”Plant Mol. Biol., 33:245-255 (1997).
Chen et al., “Functional analysis of regulatory elements in a plant embryo-specific gene”Proc. Natl. Acad. Sci. USA, 83:8560-8564 (1986).
Cheng et al., “Highly divergent methyltransferases catalyze a conserved reaction in tocopherol and plastoquinone synthesis in cyanobacteria and photosynthetic eukaryotes”Plant Cell, 15:2343-2356 (2003).
Cho et al. “Expression of gamma-tocopherol methyltransferase transgene improves tocopherol composition in lettuce”Molecules and Cells, 19(1):16-22 (2005).
Christou, “Strategies for variety-independent genetic transformation of important cereals, legumes and woody species utilizing particle bombardment”Euphytica, 85:13-27, (1995).
Collakova et al. “The role of homogentisate phytyltransferase and other tocopherol pathway enzymes in the regulation of tocopherol synthesis during abiotic stress”Plant Physiology, 133(2):930-940 (2003).
Conkling et al. “Isolation of transcriptionally regulated root-specific genes from tobacco”Plant Physiol., 93:1203-1211, (1990).
De Martinis et al., “Silencing gene expression of the Ethylene-forming enzyme results in a reversible inhibition of ovule development in transgenic tobacco plants”The Plant Cell, 11:1061-1071 (1999).
deVicente and Tanksley “QTL analysis of transgressive segregation in an interspecific tomato cross”Genetics, 134:585-596 (1993).
Evans et al., Protoplasts Isolation and Culture in “Handbook of Plant Cell Culture,” pp. 124-175,MacMillan Publishing Company, New York, 1983.
Fejes et al., “A 268 bp upstream sequence mediates the circadian clock-regulated transcription of the wheat Cab-1 gene in transgenic plants”Plant Mol. Biol., 15:921-932 (1990).
Fennoy et al. “Synonymous codon usage inZea maysL. nuclear genes is varied by levels of C and G-ending codons”Nucleic Acids Research, 21(23):5294-5300 (1993).
Frischauf et al., “Lambda replacement vectors carrying polylinker sequences”J. Mol. Biol., 170:827-842 (1983).
Fromm et al. “Expression of genes transferred into monocot and dicot plant cells by electroporation”Proc. Natl. Acad. Sci. USA, 82:5824-5828 (1985).
Fromm et al., “An octopine synthase enhancer element directs tissue-specific expression and binds ASF-1, a factor from tobacco nuclear extracts”The Plant Cell, 1:977-984 (1989).
Gardiner et al., “Development of a core RFLP map in maize using na immortalized F2 population”Genetics, 134:917-930 (1993).
Gleave, “A versatile binary vector system with a T-DNA organizational structure conducive to efficient integration of cloned DNA into the plant genome”Plant Mol. Biol., 20:1203-1207 (1992).
Golovkin et al., “An SC35-like protein and a novel serine/arginine-rich protein interact withArabidopsisU1-70K protein”J. Biol. Chem. 274(51):36428-36438, (1999).
Gould et al., “Transformation ofZea maysL. UsingAgrobacterium tummefaciensand the shoot apex”Plant Physiology, 95:426-434 (1991).
Graves and Goldman, “The transformation ofZea maysseedling withAgrobacterium tumefaciens” Plant
Alexandrov Nickolai
Brover Vyacheslav
Feldmann Kenneth
Ceres, Inc.
Fish & Richardson P.C.
Martinell James
LandOfFree
Sequence-determined DNA fragments encoding AP2 domain proteins does not yet have a rating. At this time, there are no reviews or comments for this patent.
If you have personal experience with Sequence-determined DNA fragments encoding AP2 domain proteins, we encourage you to share that experience with our LandOfFree.com community. Your opinion is very important and Sequence-determined DNA fragments encoding AP2 domain proteins will most certainly appreciate the feedback.
Profile ID: LFUS-PAI-O-2805490