Chemistry: natural resins or derivatives; peptides or proteins; – Proteins – i.e. – more than 100 amino acid residues – Metal containing – e.g. – chromoproteins – ferritin,...
Reissue Patent
2011-03-08
2011-03-08
Dunston, Jennifer (Department: 1636)
Chemistry: natural resins or derivatives; peptides or proteins;
Proteins, i.e., more than 100 amino acid residues
Metal containing, e.g., chromoproteins, ferritin,...
C530S350000, C435S006120, C536S023400
Reissue Patent
active
RE042211
ABSTRACT:
Disclosed are libraries of DNA sequences encoding zinc finger binding motifs for display on a particle, together with methods of designing zinc finger binding polypeptides for binding to a particular target sequence and, inter alia, use of designed zinc finger polypeptides for various in vitro or in vivo applications.
REFERENCES:
patent: 4990607 (1991-02-01), Katagiri et al.
patent: 5096814 (1992-03-01), Aivasidis et al.
patent: 5096815 (1992-03-01), Ladner et al.
patent: 5198346 (1993-03-01), Ladner et al.
patent: 5223409 (1993-06-01), Ladner et al.
patent: 5243041 (1993-09-01), Fernandez-Pol
patent: 5302519 (1994-04-01), Blackwood et al.
patent: 5324638 (1994-06-01), Tao et al.
patent: 5324818 (1994-06-01), Nabel et al.
patent: 5324819 (1994-06-01), Oppermann et al.
patent: 5340739 (1994-08-01), Stevens et al.
patent: 5348864 (1994-09-01), Barbacid et al.
patent: 5350840 (1994-09-01), Call et al.
patent: 5356802 (1994-10-01), Chandrasegaran
patent: 5376530 (1994-12-01), De The et al.
patent: 5403484 (1995-04-01), Ladner et al.
patent: 5436150 (1995-07-01), Chandrasegaran
patent: 5487994 (1996-01-01), Chandrasegaran
patent: 5498530 (1996-03-01), Schatz et al.
patent: 5578483 (1996-11-01), Evans et al.
patent: 5597693 (1997-01-01), Evans et al.
patent: 5639592 (1997-06-01), Abramson et al.
patent: 5674738 (1997-10-01), Abramson et al.
patent: 5686574 (1997-11-01), Moore et al.
patent: 5702914 (1997-12-01), Evans et al.
patent: 5789538 (1998-08-01), Rebar et al.
patent: 5792640 (1998-08-01), Chandrasegaran
patent: 5830721 (1998-11-01), Stemmer et al.
patent: 5869618 (1999-02-01), Lippman et al.
patent: 5871902 (1999-02-01), Weininger et al.
patent: 5871907 (1999-02-01), Winter et al.
patent: 5916794 (1999-06-01), Chandrasegaran
patent: 5939538 (1999-08-01), Leavitt et al.
patent: 5972615 (1999-10-01), An et al.
patent: 6001885 (1999-12-01), Vega et al.
patent: 6007988 (1999-12-01), Choo et al.
patent: 6013453 (2000-01-01), Choo et al.
patent: 6160091 (2000-12-01), Peukert et al.
patent: 6534261 (2003-03-01), Cox, III et al.
patent: 0 875 567 (1998-04-01), None
patent: WO 92/02536 (1992-02-01), None
patent: WO 95/11922 (1995-05-01), None
patent: WO 95/19431 (1995-07-01), None
patent: WO 96/06110 (1996-02-01), None
patent: WO 96/06166 (1996-02-01), None
patent: WO 96/11267 (1996-04-01), None
patent: WO 96/20951 (1996-07-01), None
patent: WO 96/32475 (1996-10-01), None
patent: WO 97/27212 (1997-07-01), None
patent: WO 97/27213 (1997-07-01), None
patent: WO 98/53057 (1998-11-01), None
patent: WO 98/53058 (1998-11-01), None
patent: WO 98/53059 (1998-11-01), None
patent: WO 98/53060 (1998-11-01), None
patent: WO 98/54311 (1998-12-01), None
patent: WO 99/36553 (1999-07-01), None
patent: WO 99/41371 (1999-08-01), None
patent: WO 99/42474 (1999-08-01), None
patent: WO 99/45132 (1999-09-01), None
patent: WO 99/47656 (1999-09-01), None
patent: WO 99/48909 (1999-09-01), None
patent: WO 00/23464 (2000-04-01), None
patent: WO 00/27878 (2000-05-01), None
patent: WO 00/41566 (2000-07-01), None
patent: WO 00/42219 (2000-07-01), None
Anderson et al. Synergistic activation of a human promoter in vivo by transcription factor Sp1. Molecular and Cellular Biology, vol. 11, No. 4, pp. 1935-1943, Apr. 1991.
Courey et al. Synergistic activation by the gulatmine-rich domains of human transcription factor Sp1. Cell, vol. 59, pp. 827-836, Dec. 1989.
Narayan et al. Structures of zinc finger domains from transcription factor Sp1. The Journal of Biological Chemistry, vol. 272, No. 12, pp. 7801-7809, Mar. 1997.
Zhou et al. Adenovirus E1A243 Disrupts the ATF/CREB-YY1 Complex at the Mouse c-fos Promoter. Journal of Virology, vol. 69, No. 12, pp. 7402-4709, Dec. 1995.
Lee et al. Evidence for physical interaction between the zinc-finger transcription factors YY1 and Sp1. Proc Natl Acad Sci U S A. vol. 90, No. 13, pp. 6145-6149, Jul. 1, 1993.
Houbaviy et al.Cocrystal structure of YY1 bound to the adeno-associated virus P5 initiator, Proc Natl Acad Sci U S A. vol. 93, No. 24, pp. 13577-13582, Nov. 26, 1996.
Hyde-DeRuyscher et al. DNA binding sites for the transcriptional activator/repressor YY1. Nucleic Acids Res. vol. 23, No. 21, pp. 4457-4465, Nov. 11, 1995.
Hard et al, Science, Jul. 13, 1990, vol. 249, pp. 157-160.
Agarwal et al., “Stimulation of Transcript Elongation Requires Both the Zinc Finger and RNA Polymerase II Binding Domains of Human TFIIS,”Biochemistry30(31):7842-7851 (1991).
Antao et al., “A Thermodynamic Study of Unusually Stable RNA and DNA Hairpins,”Nuc. Acids. Res.19(21):5901-5905 (1991).
Barbas, C. F., “Recent Advances in Phage Display,”Curr. Opin. Biotech.4:526-530 (1993).
Barbas et al., “Assembly of Combinatorial Antibody Libraries on Phage Surfaces: The Gene III Site,”PNAS88:7976-7982 (1991).
Barbas et al., “Semisynthetic Combinatorial Antibody Libraries: A Chemical Solution to the Diversity Problem,”PNAS89:4457-4461 (1992).
Beerti et al., “Toward Controlling Gene Expression at Will: Specific Regulation of the erbB-2/HER-2 Promoter by Using Polydactyl Zinc Finger Proteins Constructed From Modular Building Blocks,”Proc. Natl. Acad. Sci. U.S.A.95:14628-14633 (1998).
Beerti et al., “Positive and negative-regulation of endogenous genes by designed transcription factors,”Proc. Natl. Acad. Sci. U.S.A.97:1495-1500 (2000).
Bellefroid et al., “Clustered Organization of Homologous KRAB Zinc-Finger Genes With Enhanced Expression in Human T Lymphoid Cells,”EMBO J.12(4):1363-1374 (1993).
Berg, J.M., “DNA Binding Specificity of Steroid Receptors,”Cell57:1065-1068 (1989).
Berg, J.M., “Sp1 and the Subfamily of Zinc-Finger Proteins with Guanine-Rich Binding Sites,”PNAS89:11109-11110 (1992).
Berg et al., “The Galvanization of Biology: A Growing Appreciation for the Roles of Zinc,”Science271:1081-1085 (1996).
Berg, J.M., “Letting Your Fingers do the Walking,”Nature Biotechnology15:323 (1997).
Bergqvist et al., “Loss of DNA-binding and new Transcriptional Trans-Activation Function in Polyomavirus Large T—Antigen with Mutation of Zinc Finger Motif,”Nuc. Acids Res.18(9):2715-2720 (1990).
Blaese et al., “Vectors in Cancer Therapy: How Will They Deliver?,”Cancer Gene Therapy2(4):291-297 (1995).
Bonde et al., “Ontogeny of the v-erbA Oncoprotein from the Thyroid Hormone Receptor: An Alteration in the DNA Binding Domain Plays a Role Crucial for verbA Function,”J. Virology65(4):2037-2046 (1991).
Caponigro et al., “Transdominant Genetic Analysis of a Growth Control Pathway,” PNAS 95:7508-7513 (1998).
Celenza et al., “A Yeast Gene That Is Essential for Release from Glucose Repression Encodes a Protein Kinase,”Science233:1175-1180 (1986).
Cheng et al., “Identification of Potential Target Genes for Adrip through Characterization of Essential Nucleotides in UASI,”Mol. Cellular Biol.14(6):3842-3852 (1994).
Cheng et al., “A Single Amino acid Substitution in Zinc Finger 2 of Adrip Changes Its Binding Specificity at two Positions in UAS1,”J. Mol. Biol.251:1-8 (1995).
Choo et al., A Role in DNA-Binding for the Linker Sequences of the First Three Zinc Fingers of TFIIIANuc. Acids Res.21(15):3341-3346 (1993).
Choo et al., “Promoter-Specific Activation of Gene Expression Directed By Bacteriophage-Selected Zinc Fingers,”J. Mol. Biol.273:525-532 (1997).
Choo et al., “Designing DNA-Binding Proteins on the Surface of Filamentous Phage,”Curr. Opin. Biotechnology6:431-436 (1995).
Choo, Y., “Recognition of DNA Methylation by Zinc Fingers,”Nature Struct Biol.5(4):264-265 (1998).
Choo et al., “All Wrapped Up,”Nature Struct Biol5(4):253-255 (1998).
Choo, Y., “End Effects in DNA Recognition Code,”Nuc. Acids. Res.26(2):554-557 (1998).
Choo et al., Physical Basis of Protein-DNA Recognition Code,Curr. Opin. Struct. Biol.7(1):117-125 (1997).
Choo et al., “Toward a Code for the Interactions of Zinc Fingers
Choo Yen
Klug Aaron
Sanchez-Garcia Isidro
Dunston Jennifer
Gendaq Limited
Pasternak Dahna S.
Robins & Pasternak LLP
LandOfFree
Relating to binding proteins for recognition of DNA does not yet have a rating. At this time, there are no reviews or comments for this patent.
If you have personal experience with Relating to binding proteins for recognition of DNA, we encourage you to share that experience with our LandOfFree.com community. Your opinion is very important and Relating to binding proteins for recognition of DNA will most certainly appreciate the feedback.
Profile ID: LFUS-PAI-O-2690466