Methods for detection and quantification of analytes in...

Details Methods for detection and quantification of analytes in... Methods for detection and quantification of analytes in...

2011-04-05

2011-04-05

Chunduru, Suryaprabha (Department: 1637)

Chemistry: molecular biology and microbiology

Measuring or testing process involving enzymes or...

Involving nucleic acid

C536S024310, C536S024320

Reexamination Certificate

active

07919237

ABSTRACT:
The invention provides a diverse population of uniquely labeled probes, containing about thirty or more target specific nucleic acid probes each attached to a unique label bound to a nucleic acid. Also provided are methods of using and producing these populations of uniquely labeled nucleic acid probes.

REFERENCES:
patent: 4716106 (1987-12-01), Chiswell
patent: 4824775 (1989-04-01), Dattagupta et al.
patent: 5124246 (1992-06-01), Urdea et al.
patent: 5293050 (1994-03-01), Chapple-Sokol et al.
patent: 5354707 (1994-10-01), Chapple-Sokol et al.
patent: 5401847 (1995-03-01), Glazer et al.
patent: 5487973 (1996-01-01), Nilsen et al.
patent: 5679519 (1997-10-01), Oprandy
patent: 5707797 (1998-01-01), Windle
patent: 5981180 (1999-11-01), Chandler et al.
patent: 6027889 (2000-02-01), Barany et al.
patent: 6261779 (2001-07-01), Barbara-Guillem et al.
patent: 6268148 (2001-07-01), Barany et al.
patent: 6277583 (2001-08-01), Krantz et al.
patent: 6312892 (2001-11-01), Barany et al.
patent: 6361944 (2002-03-01), Mirkin et al.
patent: 6417340 (2002-07-01), Mirkin et al.
patent: 6428667 (2002-08-01), Glazer et al.
patent: 6465175 (2002-10-01), Horn et al.
patent: 6495324 (2002-12-01), Mirkin et al.
patent: 6506564 (2003-01-01), Mirkin et al.
patent: 6506594 (2003-01-01), Barany et al.
patent: 6534266 (2003-03-01), Singer
patent: 6534293 (2003-03-01), Barany et al.
patent: 6537755 (2003-03-01), Drmanac
patent: 6582921 (2003-06-01), Mirkin et al.
patent: 6610491 (2003-08-01), Mirkin et al.
patent: 6645721 (2003-11-01), Mirkin et al.
patent: 6673548 (2004-01-01), Mirkin et al.
patent: 6677122 (2004-01-01), Mirkin et al.
patent: 6682895 (2004-01-01), Mirkin et al.
patent: 6750016 (2004-06-01), Mirkin et al.
patent: 6767702 (2004-07-01), Mirkin et al.
patent: 6797470 (2004-09-01), Barany et al.
patent: 2002/0009728 (2002-01-01), Bittner et al.
patent: 2002/0028457 (2002-03-01), Empedocles et al.
patent: 2002/0150921 (2002-10-01), Barany et al.
patent: 2002/0192687 (2002-12-01), Mirkin et al.
patent: 2003/0022182 (2003-01-01), Barany et al.
patent: 2003/0032016 (2003-02-01), Barany et al.
patent: 2003/0082545 (2003-05-01), Barany et al.
patent: 2003/0087242 (2003-05-01), Mirkin et al.
patent: 2003/0175750 (2003-09-01), Barany et al.
patent: 2003/0190634 (2003-10-01), Barany et al.
patent: 2004/0048308 (2004-03-01), Barany et al.
patent: 2004/0203061 (2004-10-01), Barany et al.
patent: 2004/0214224 (2004-10-01), Barany et al.
patent: 0292128 (1988-11-01), None
patent: 1006002 (2000-06-01), None
patent: WO 9804740 (1998-02-01), None
patent: WO-9919515 (1999-04-01), None
patent: WO-9937814 (1999-07-01), None
patent: WO-9947643 (1999-09-01), None
patent: WO-9952708 (1999-10-01), None
patent: WO-9962926 (1999-12-01), None
patent: WO-0222889 (2002-03-01), None
patent: WO-02056014 (2002-07-01), None
patent: WO-02079490 (2002-10-01), None
Tanke, HJ. New strategy for multi-colour fluorescence in situ hybridization: COBRA: COmbined binary ratio labelling. European J of Human Genetics, vol. 7, pp. 2-11, 1999.
Yokota, et al. A new method for straightening DNA molecules for optical restriction mapping. Nucleic Acids Res., vol. 25 (5), pp. 1064-1070, 1997.
Chen, et al. “A Microsphere-Based Assay for Multiplexed Single Nucleotide Polymorphism Analysis Using Single Base Chain Extension.” Genome Research 10(4): 549-557. Apr. 2000.
Henegariu, et al. “Rapid DNA Fiber Technique for Size Measurements of Linear and Circular DNA Probes.” BioTechniques 31: 246-250. 2001.
Jayasena, S.D. “Aptamers: An Emerging Class of Molecules That Rival Antibodies in Diagnostics.” Clinical Chemistry 45(9): 1628-1650. 1999.
Matsuura, et al. “Real-time observation of a single DNA digestion by lamda exonuclease under a fluorescence microscope field.” Nucleic Acids Research 29(16): E79. 2001.
Tanke, et al. “New strategy for multi-colour fluorescence in situ hybridization: COBRA: COmbined Binary RAtio labelling.” European Journal of Human Genetics 7:2-11, 1999.
Yokota, et al. “A new method for straightening DNA molecules for optical restriction mapping.” Nuc. Acids Res. 25 (5): 1064-1070. 1997.
Asbury et al., “Trapping of DNA in Nonuniform Oscillating Electric Fields”,Biophys. J., 74:1024-1030 (1998).
Bonetta, L., “Gene expression: one size does not fit all”,Nature Meth., 3(5):401-409 (2006).
Brenner et al., “Gene expression analysis by massively parallel signature sequencing (MPSS) on microbead arrays”,Nature Biotech., 18(6):630-634 (2000).
Chen et al., “Homogeneous genotyping assays for single nucleotide polymorphisms with fluorescence resonance energy transfer detection”, Genet. Anal., 14:157-163 (1999).
Collins et al., “A branched DNA signal amplification assay for quantification of nucleic acid targets below 100 molecules/ml”,Nucl. Acids Res., 25(15):2979-2984 (1997).
Cramer et al., “Using fluorescence resonance energy transfer (FRET) for measuring 2-5A analogues ability to activate RNase L”,Nucleosides Nucleotides, 18(6&7):1523-1525 (1999).
Dauwerse et al., “Multiple colors by fluorescencein situhydridization using ratio-labelled DNA probes create molecular karyotype”,Human Molec. Genet., 1(8):593-598 (1992).
Deniz et al., “Single-pair fluorescence resonance energy transfer on freely diffusing molecules: observation of Forster distance dependence and subpopulations”,Proc. Natl. Acad. Sci. U.S.A., 96(7):3670-3675 (1999).
Empedocles et al., “Nanocrystals: A new material for high-sensitivity, multicolor bioassays”, (Abstract No. 212),Abstracts of Papers Amer. Chem. Soc., 219:212 (2000).
Empedocles et al., “Photoluminescence from Single Semiconductor Nanostructures”,Adv. Mat., 11(15):1243-1256 (1999).
Fan et al., “Parallel Genotyping of Human SNPs Using Generic High-density Oligonucleotide Tag Arrays”,Genome Res., 10(6):853-860 (2000).
Geselowitz et al., “Fluorescence resonance energy transfer analysis of RNase L-catalyzed oligonucleotide cleavage”,Antisense Nucleic Acid Drug Dev., 10(1):45-51 (2000).
Hirschhorn et al., “SBE-TAGS: An array-based method for efficient single-nucleotide polymorphism genotyping”,Proc. Natl. Acad. Sci. U.S.A., 97(22):12164-12169 (2000).
Hodak et al., “Photophysics of Nanometer Sized Metal Particles: Electron-Phonon Coupling and Coherent Excitation of Breathing Vibrational Modes”,J. Phys. Chem., 104(43):9954-9965 (2000).
Horn et al., “Forks and combs and DNA: The synthesis of branched oligodeoxyribonucleotides”,Nucl. Acids Res., 17(17):6959-6957 (1989).
Luehrsen et al., “High-density hapten labeling and HRP conjugation of oligonucleotides for use as in situ hybridization probes to detect mRNA targets in cells and tissues”,J. Histochem. Cytochem., 48(1):133-145 (2000).
Malik et al., “Semiconductor nanoparticles: their properties, synthesis and potential for application”,South African J. Sci., 96(2):55-60 (2000).
Morrison et al., “Two-Color Ratio-Coding of Chromosome Targets in Fluorescence in Situ Hybridization: Quantitative Analysis and Reproducibility”,Cytometry, 27:314-326 (1997).
Nederlof et al., “Fluorescence Ratio Measurements of Double-Labeled Probes for Multiple in Situ Hybridization by Digital Imaging Microscopy”,Cytometry, 13:839-845 (1992).
Penner, R. M., “Hybrid Electrochemical/Chemical Synthesis of Quantum Dots,”Acc. Chem. Res., 33(2):78-86 (2000).
Tong et al., “Combinatorial fluorescence energy transfer tags for multiplex biological assays”,Nature Biotech., 19(8):756-759 (2001).
Toth et al., “DNA Curvature in Solution Measured by Fluorescence Resonance Energy Transfer”,Biochem., 37(22):8173-8179 (1998).
Vitiello et al., “Intracellular ribozyme-catalyzedtrans-cleavage of RNA monitored by fluorescence resonance energy transfer”,RNA, 6(4):628-637 (2000).
Wang et al., “Phosphate-Specific Fl

Affiliated with

Also associated with

Rating

Methods for detection and quantification of analytes in... does not yet have a rating. At this time, there are no reviews or comments for this patent.

If you have personal experience with Methods for detection and quantification of analytes in..., we encourage you to share that experience with our LandOfFree.com community. Your opinion is very important and Methods for detection and quantification of analytes in... will most certainly appreciate the feedback.

Rate now

Comments { 0 }

Profile ID: LFUS-PAI-O-2668117