Fluorescent primer system for detection of nucleic acids (Q...

Organic compounds -- part of the class 532-570 series – Organic compounds – Carbohydrates or derivatives

Reexamination Certificate

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C536S023100, C536S024330, C536S026600, C435S006120, C435S091100, C435S091200, C422S067000

Reexamination Certificate

active

07964716

ABSTRACT:
The present invention is directed to a self-quenching primer comprising; a fluorophore that can be quenched by guanine; an oligonucleotide sequence that forms a hairpin; an oligonucleotide that is a target specific sequence and; use in amplification reactions, particularly in polymerase chain reactions, during which the fluorophore is released thereby emitting fluorescence.

REFERENCES:
patent: 98002449 (1998-01-01), None
Kurata, S., et al. (2001), “Fluorescent Quenching-Based Quantitative Detection of Specific DNA/RNA Using a BODIPU®FL-Labeled Probe or Primer,” Nucleic Acids Research, 29(6):e34, pp. 1-5.
Zoe Jordens, J., et al. (2000), “Amplification with Molecular Beacon Primers and Reverse Line Blotting for the Detection and Typing of Human Papillomaviruses,” Journal of Virological Methods, 89:29-37.
Nuovo, G.J., et al. (1999), “In Situ Amplification Using Universal Energy Transfer-Labeled Primers,” the Journal of Histochemistry & Cytochemistry, 47(3):273-279.
Nazarenko, I.A., et al. (1997), “A Closed Tube Format for Amplification and Detection of DNA Based on Energy Transfer,” Nucleic Acids Research, 25(12):2516-2521.
Nazarenko, I., et al. (2002), “Multiplex Quantitative PCR Using Self-Quenched Primers Labeled With a Single Fluorophore,” Nucleic Acids Research 30(9):e37, pp. 1-7.
Fiandaca, M.J., et al. (2001), “Self-Reporting PNA/DNA Primers for PCR Analysis,” Genome Research, 11:609-613.
Tyagi, S. et al. (1998), “Multicolor Molecular Beacons for Allele Discrimination,” Nature Biotechnology, 16:49-53.
Liu, X.K. & Hong, Y. (2007), “Q-Priming PCR: A Quantitative Real-time PCR System Using a Self-Quenched BODIPY FL-Labeled Primer,” Analytical Biochemistry, 360:154-156.
Heinlein, T. et al., “Photoinduced Electron Transfer Between Fluorescent Dyes and Guanosine Residues in DNA-Hairpins,” Journal of Physical Chemistry B 20030807 American Chemical Society US, Aug. 2003, vol. 107, No. 31, pp. 7957-7964.
Knemeyer, J.P. et al., “Probes for Detection of Specific DNA Sequences at the Single-Molecule Level,” Analytical Chemistry, Aug. 2000, vol. 72, No. 16, pp. 3717-3724.
Tani, H. et al., “Quantification of Genetically Modified Soybean by Quenching Probe Polymerase Chain Reaction,” Journal of Agricultural and Food Chemistry, American Chemical Society, Washington, US, Apr. 2005, vol. 53, No. 7, pp. 2535-2540.
Communication dated Apr. 17, 2009, Supplementary European Search Report, Applicant: Temasek Life Sciences Laboratory Limited, Application No. 06824649.5-2402 / 1960542 PCT/SG2006000378, 7 pages.

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