Chemistry: molecular biology and microbiology – Measuring or testing process involving enzymes or... – Involving nucleic acid
Reexamination Certificate
2011-02-15
2011-02-15
Lu, Frank W (Department: 1634)
Chemistry: molecular biology and microbiology
Measuring or testing process involving enzymes or...
Involving nucleic acid
C435S007320, C435S091100, C435S242000
Reexamination Certificate
active
07888011
ABSTRACT:
The invention provides methods and related products for extracting nucleic acids such as DNA from prokaryotic spores. The invention also encompasses methods for identifying the source of such spores via analysis of the isolated nucleic acids.
REFERENCES:
patent: 4735901 (1988-04-01), Kurtz et al.
patent: 5610076 (1997-03-01), Founds et al.
patent: 5766914 (1998-06-01), Deits
patent: 5834280 (1998-11-01), Oxenboll et al.
patent: 5922536 (1999-07-01), Nivens et al.
patent: 6110674 (2000-08-01), Nivens et al.
patent: 6184020 (2001-02-01), Blinkovsky et al.
patent: 6210896 (2001-04-01), Chan
patent: 6263286 (2001-07-01), Gilmanshin et al.
patent: 6355420 (2002-03-01), Chan
patent: 6403311 (2002-06-01), Chan
patent: 6498041 (2002-12-01), Tabacco et al.
patent: 6696022 (2004-02-01), Chan et al.
patent: 6762059 (2004-07-01), Chan et al.
patent: 6772070 (2004-08-01), Gilmanshin et al.
patent: 6790671 (2004-09-01), Austin et al.
patent: 6852495 (2005-02-01), Kojima
patent: 6927065 (2005-08-01), Chan et al.
patent: 6979449 (2005-12-01), Mock
patent: 7070773 (2006-07-01), Conerly
patent: 7097997 (2006-08-01), Deslys et al.
patent: 7108974 (2006-09-01), Ecker et al.
patent: 2002/0110818 (2002-08-01), Chan
patent: 2002/0119455 (2002-08-01), Chan
patent: 2002/0187508 (2002-12-01), Wong
patent: 2002/0197639 (2002-12-01), Shia et al.
patent: 2003/0059822 (2003-03-01), Chan et al.
patent: 2003/0215864 (2003-11-01), Gilmanshin et al.
patent: 2003/0235854 (2003-12-01), Chan
patent: 2004/0009612 (2004-01-01), Zhao et al.
patent: 2004/0053399 (2004-03-01), Gilmanshin
patent: 2004/0166025 (2004-08-01), Chan et al.
patent: 2004/0180328 (2004-09-01), Ecker et al.
patent: 2004/0214211 (2004-10-01), Gilmanshin et al.
patent: 2004/0235014 (2004-11-01), Nadel et al.
patent: 2005/0042665 (2005-02-01), Gilmanshin
patent: 2005/0112595 (2005-05-01), Zhao et al.
patent: 2005/0112606 (2005-05-01), Fuchs et al.
patent: 2005/0112620 (2005-05-01), Chan
patent: 2005/0112671 (2005-05-01), Maletta et al.
patent: 2005/0123944 (2005-06-01), Neely et al.
patent: 2005/0123974 (2005-06-01), Gilmanshin et al.
patent: 2005/0142595 (2005-06-01), Maletta et al.
patent: 2005/0153354 (2005-07-01), Gilmanshin
patent: 2005/0196790 (2005-09-01), Rooke et al.
patent: 2005/0221408 (2005-10-01), Nalefski et al.
patent: 2005/0221418 (2005-10-01), Fell et al.
patent: 2005/0282202 (2005-12-01), Brolaski et al.
patent: 2006/0259249 (2006-11-01), Sampath et al.
patent: 2006/0281103 (2006-12-01), Burns et al.
patent: 2007/0037181 (2007-02-01), Melkonyan et al.
patent: 2007/0048735 (2007-03-01), Ecker et al.
patent: WO 98/35012 (1998-08-01), None
patent: WO 00/09757 (2000-02-01), None
Fairhead et al., Prevention of DNA damage in spores and in vitro by small, acid-soluble proteins fromBacillusspecies. Journal of Bacteriology, 175, 1367-1374, 1993.
Kuske et al., Small-Scale DNA Sample Preparation Method for Field PCR Detection of Microbial Cells and Spores in Soil. Applied and Environmental Microbiology, 64, 2463-2472, 1998.
Macdonald et al., Comparison of Pulsed-Field Gel Electrophoresis DNA Fingerprints of Field Isolates of the EntomopathogenBacillus popilliae. Applied and Environmental Microbiology, 61, 2446-2449, 1995.
The definition of “prokaryote” from Wikipedia, the free encyclopedia. Printed on Dec. 18, 2009.
The definition of “archaea” from Wikipedia, the free encyclopedia. Printed on Dec. 18, 2009.
Atrih et al., Structural analysis ofBacillus subtilis168 endospore peptidoglycan and its role during differentiation. J Bacteriol. Nov. 1996;178(21):6173-83.
Cano et al., Revival and identification of bacterial spores in 25- to 40-million-year-old Dominican amber. Science. May 19, 1995;268(5213):1060-4. Abstract Only.
Driks et al., Morphogenesis and properties of the bacterial spore. In Prokaryotic development, ASM Press, 2000. p. 191-218.
Fairhead et al., Binding of DNA to alpha/beta-type small, acid-soluble proteins from spores ofBacillusorClostridiumspecies prevents formation of cytosine dimers, cytosine-thymine dimers, and bipyrimidine photoadducts after UV irradiation. J Bacteriol. May 1992;174(9):2874-80.
Goldman et al.,Bacillus subtilisspore coats: complexity and purification of a unique polypeptide component. J Bacteriol. Sep. 1978;135(3):1091-106.
Griffith et al., Electron microscopic studies of the interaction between aBacillus subtilisalpha/beta-type small, acid-soluble spore protein with DNA: protein binding is cooperative, stiffens the DNA, and induces negative supercoiling. Proc Natl Acad Sci U S A. Aug. 16, 1994;91(17):8224-8.
Ivnitski et al., Nucleic acid approaches for detection and identification of biological warfare and infectious disease agents. Biotechniques. Oct. 2003;35(4):862-9. Abstract Only.
Jenkinson et al., Synthesis and order of assembly of spore coat proteins inBacillus subtilis. J Gen Microbiol. 1981;123:1-16.
Kornberg et al., Origin of proteins in sporulation. Annu Rev Biochem. 1968;37:51-78.
La Duc et al.,Bacillus odysseyisp. nov., a round-spore-formingBacillusisolated from the Mars Odyssey spacecraft. Int J Syst Evol Microbiol. Jan. 2004;54(Pt 1):195-201.
Mohr et al., Binding of small acid-soluble spore proteins fromBacillus subtilischanges the conformation of DNA from B to A. Proc Natl Acad Sci U S A. Jan. 1, 1991;88(1):77-81.
Nicholson et al., Dramatic increase in negative superhelicity of plasmid DNA in the forespore compartment of sporulating cells ofBacillus subtilis. J Bacteriol. Jan. 1990;172(1):7-14.
Nicholson et al., Binding of DNA in vitro by a small, acid-soluble spore protein fromBacillus subtilisand the effect of this binding on DNA topology. J Bacteriol. Dec. 1990;172(12):6900-6.
Pandey et al., Properties of theBacillus subtilisspore coat. J Bacteriol. Mar. 1979;137(3):1208-18.
Pogliano et al., Visualization of the subcellular location of sporulation proteins inBacillus subtilisusing immunofluorescence microscopy. Mol Microbiol. Nov. 1995;18(3):459-70.
Popham et al., Analysis of the peptidoglycan structure ofBacillus subtilisendospores. J Bacteriol. Nov. 1996;178(22):6451-8.
Santo et al., Ultrastructural analysis during germination and outgrowth ofBacillus subtilisspores. J Bacteriol. Oct. 1974;120(1):475-81.
Setlow et al., DNA in dormant spores ofBacillusspecies is in an A-like conformation. Mol Microbiol. Mar. 1992;6(5):563-7. Abstract Only.
Warth et al., Structure of the peptidoglycan from spores ofBacillus subtilis. Biochemistry. Apr. 11, 1972;11(8):1389-96.
Warth et al., Structure of the peptidoglycan from vegetative cell walls ofBacillus subtilis. Biochemistry. Nov. 23, 1971;10(24):4349-58.
Warth et al., Structure of the peptidoglycan of bacterial spores: occurrence of the lactam of muramic acid. Proc Natl Acad Sci U S A. Oct. 1969;64(2):528-35.
Kutchma et al., Small-scale isolation of genomic DNA fromStreptomyces myceliaor spores. Biotechniques. Mar. 1998;24(3):452-6.
Berendzen et al., A rapid and versatile combined DNA/RNA extraction protocol and its application to the analysis of a novel DNA marker set polymorphic betweenArabidopsis thalianaecotypes Col-0 and Landsberg erecta. Plant Methods Aug. 23, 2005;1(1):4, pp. 1-15.
Cummings et al., A simple and efficient method for isolating genomic DNA from endomycorrhizal spores. Gene Anal Tech. Sep.-Oct. 1989;6(5):89-92.
Farrell et al.,Bacillus globigiibugbeads: a model simulant of a bacterial spore. Anal Chem. Jan. 15, 2005;77(2):549-55.
Paidhungat et al., Genetic requirements for induction of germination of spores ofBacillus subtilisby Ca(2+)-dipicolinate. J Bacteriol. Aug. 2001;183(16):4886-93.
Paidhungat et al., Role of ger proteins in nutrient and nonnutrient triggering of spore germination inBacillus subtilis. J Bacteriol. May 2000;182(9):2513-9.
Ragkousi et al., Transglutaminase-mediated cross-linking of GerQ in the coats ofBacillus subtilisspores. J Bacteriol. Sep. 2004; 186(17):5567-75.
Riesenman et al., Role of the spore coat layers inBacillus subtilisspore resistance to hydrogen peroxide, artificial UV-C, UV-B, and solar UV radiation. Appl Environ Microbiol. Feb. 2000;66(2):620-6.
Van Doorn et al.,
Goncalves Nuno
Nilsen Trine
Lu Frank W
U.S. Genomics, Inc.
Wolf Greenfield & Sacks P.C.
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