Simultaneous sequencing of tagged polynucleotides

Chemistry: molecular biology and microbiology – Measuring or testing process involving enzymes or... – Involving nucleic acid

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435 912, 935 77, 935 78, C12Q 168, C12P 1934, C12N 1500

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057631751

ABSTRACT:
The invention provides a method for sequencing each polynucleotide of a population by using an oligonucleotide tag assigned to each such polynucleotide for transfering sequence information to a tag complement located on a spatially addressable array of such complements. That is, a unique tag is attached to each polynucleotide of a population which can be copied and used to shuttle sequence information to its complement at a fixed position on an array of such complements. After a tag hybridizes with its complement, a signal is generated that is indicative of the transferred sequence information. Sequences of the tagged polynucleotides are determined by repeated cycles of information transfer and signal detection at the positions of the corresponding tag complements.

REFERENCES:
patent: 4293652 (1981-10-01), Cohen
patent: 4942124 (1990-07-01), Church
patent: 4994370 (1991-02-01), Silver et al.
patent: 5102785 (1992-04-01), Livak et al.
patent: 5149625 (1992-09-01), Church
patent: 5310893 (1994-05-01), Erlich et al.
patent: 5405746 (1995-04-01), Uhlen
patent: 5407799 (1995-04-01), Stuidier
patent: 5413909 (1995-05-01), Bassam et al.
patent: 5427911 (1995-06-01), Ruano
patent: 5496699 (1996-03-01), Sorenson
patent: 5508169 (1996-04-01), Deugau et al.
Gramegna et al., Research in Virology 144:307-309 (1993).
Szybalski, Gene 135: 279-290 (1993).
Martin, Genome 31: 107-1080 (1989).
McBride et al., Clinical Chemistry 35(11):2196-2201 (1989).
Berg et al, Biotechniques 17(5):896-901 (1994).
Kasai et al., Nucleic Acids Research20(24): 6509-6515 (1992).
Boles et al., Current Genetics 28: 197-198 (1995).
Wu et al., PNAS 86:2757-2760 (1990).
Scharf et al., PNAS 86:6215-6219 (1990).
Okayama et al., J. Laboratory and Clinical Medicine 114(2): 105-113 (1989).
Roberts and Macelis, "Rebase-restriction enzymes and methylases," Nucleic Acids Research, 21: 3125-3137 (1993).
Hasan et al, "A novel multistep method for generating precise unidirectional deletions using BspMi, a class-IIS restriction enzyme," Gene, 50: 55-62 (1986).
Hasan et al, "An Mboll/Fokl trimming plasmid allowing consecutive cycles of precise 1-to 12-base-pair deletions in cloned DNA," Gene, 82: 305-311 (1989).
Syzbalski et al, "Class-IIS restriction enzymes--a review," Gene, 100:013-26 (1991).
Kwok et al, "Effects of primer--template mismatches on the polymerase chain reaction: Human immunodeficiency virus type 1 model studeis," Nucleic Acids Research, 18: 999-1005 (1990).
Huang et al, "Extension of base mispairs by Taq DNA polymerase: implications for single nucleotide discrimination in PCR," Nucleic Acids Research 20: 4567-4573(1992).
Short Technical Reports, "Priming Efficiency," BioTechniques, 18: 84-89 (1995).
Martin and Castro, "Base pairing involving deoxyinosine: implications for probe design," Nucleic Acids Research, 13: 8927-8938 (1985).
Kawase et al, "Studies on nucleic acid interactions 1. Stabilities of mini-duplexes (dG.sub.2 A.sub.4 XA.sub.4 G.sub.2 .cndot.dC.sub.2 T.sub.4 YT.sub.4 C.sub.2) and self-complementary d(GGGAAXYTTCCC) containing deoxyinosine and other mismatched bases," Nucleic Acids Research, 14: 7727-7736 (1986).
Case-Green and Southern, "Studies on the base pairing properties of deoxyinosine by solid phase hybridisation to oligonucleotides," Nucleic Acids Research, 22: 131-139 (1994).
Ausubel et al, "Mutagenesis of Cloned DNA," Current Protocols in Molecular Biology, Chapter 8, John Wiley & Sons, 1995.
Mormeneo et al, "Precise nucleotide sequence modifications with bidirectionally cleaving class-IIS excision linkers," Gene, 61: 21-30 (1987).
Unrau and Deugau, "Non-cloning amplification of specific DNA fragments from whole genomic DNA digests using DNA `indexers `, "Gene, 145: 163-169 (1994).
Kato, "Description of the entire mRNA population by a 3'end cDNA fragment generated by a 3'end cDNA fragment generated by class IIS restriction enzymes," Nucleic Acids Research, 23: 3685-3690 (1995).

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