Chemistry: molecular biology and microbiology – Measuring or testing process involving enzymes or... – Involving nucleic acid
Patent
1998-04-03
2000-10-03
Marschel, Ardin H.
Chemistry: molecular biology and microbiology
Measuring or testing process involving enzymes or...
Involving nucleic acid
435 911, 435 912, C12Q 168
Patent
active
061271217
ABSTRACT:
Oligonucleotides in which one or more purine residues are substituted by pyrazolo[3,4-d]pyrimidines exhibit improved hybridization properties. Oligonucleotides containing pyrazolo[3,4-d]pyrimidine base analogues have higher melting temperatures than unsubstituted oligonucleotides of identical sequence. Thus, in assays involving hybridization of an oligonucleotide probe to a target polynucleotide sequence, higher signals are obtained. In addition, mismatch discrimination is enhanced when pyrazolo[3,4-d]pyrimidine-containing oligonucleotides are used as hybridization probes, making them useful as probes and primers for hybridization, amplification and sequencing procedures, particularly those in which single- or multiple-nucleotide mismatch discrimination is required.
REFERENCES:
patent: 4358535 (1982-11-01), Falkow et al.
patent: 4683195 (1987-07-01), Mullis et al.
patent: 4683202 (1987-07-01), Mullis
patent: 4800159 (1989-01-01), Mullis et al.
patent: 4868105 (1989-09-01), Urdea et al.
patent: 4883750 (1989-11-01), Whiteley et al.
patent: 5124246 (1992-06-01), Urdea et al.
patent: 5210015 (1993-05-01), Gelfand et al.
patent: 5419966 (1995-05-01), Reed et al.
patent: 5432272 (1995-07-01), Benner
patent: 5449767 (1995-09-01), Ward et al.
patent: 5492806 (1996-02-01), Drmanac et al.
patent: 5512667 (1996-04-01), Reed et al.
patent: 5525464 (1996-06-01), Drmanac et al.
patent: 5556752 (1996-09-01), Lockhart et al.
patent: 5652099 (1997-07-01), Conrad
patent: 5800992 (1998-09-01), Fodor et al.
patent: 5824796 (1998-10-01), Petrie et al.
Matthews et al., Analytical Biochemistry, vol. 169, pp 1-25, 1988.
Belousov et al., "Tripex targeting of a native gene in permeabilized intact cells: covalent modification of the gene for the chemokine receptor CCR5," Nucleic Acids Res., vol. 26(5):1324-1328 (1998).
Cardullo et al., "Detection of nucleic acid hybridization by nonradiative fluorescence resonance energy transfer," Proc. Natl. Acad. Sci. USA, vol. 85:8790-8794 (1988).
Chen et al., "Synthesis of oligodeoxyribonucleotide N3'.fwdarw.P5' phosphoramidates," Nucleic Acids Res., vol. 23(14):2661-2668 (1995).
Draper et al., "A Method for Linking Fluorescent Labels to Polynucleotides: Application to Studies of Ribosome-Ribonucleic Acid Interactions," Biochemistry, vol. 19:1774-1781 (1980).
Heid et al., "Real Time Quantitative PCR," Genome Res., vol. 6:986-994 (1996).
Livak et al., "Oligonucleatides with Fluorescent Dyes at Opposite Ends Provide a Quenched Probe System Useful for Detecting PCR Product and Nucleic Acid Hybridization," PCR Meth. App., vol. 4:357-362 (1995).
Lukhtanov et al., "Oligodeoxyribonucleotides with Conjugated Dihydropyrroloindole Oligopeptides: Preparation and Hybridization Properties," Bioconj. Chem., vol. 6:418-426 (1995).
Parris et al., "A signature element distinguishes sibling and independent mutations in a shuttle vector plasmid," Gene, vol. 117:1-5 (1992).
Sanger et al., "DNA sequencing with chain-terminating inhibitors," Proc. Natl. Acad. Sci. USA, vol. 74:5463-5467 (1977).
Seela et al., "168. Synthesis of 2'-Deoxyribofuranosides of 8-Aza-7-deazaguanine and Related Pyrazolo[3,4-d]pyrimidines," Helvetica Chimica Acta, vol. 69:1602-1613 (1986a).
Seela et al., "2'-Desoxyribofuranoside des 6-Oxoallopurinols und verwandter 4,6-substituierter Pyrazolo[3,4-d]pyrimidine," Liebigs Ann. Chem., 1213-1221 (1986b).
Seela et al., "131.8-Aza-7-deaza-2'-deoxyguanosine: Phosphoramidite Synthesis and Properties of Octanucleotides," Helvetica Chimica Acta, 71:1191-1199 (1988a).
Seela et al., "193.8-Aza-7-deazaadenine N.sup.8 -and N.sup.9 -(.beta.-D-2'-Deoxyribofuranosides): Building Blocks for Automated DNA Synthesis and Properties of Oligodeoxyribonucleotides," Helvetica Chimica Acta, 71:1813-1823. (1988b).
Seela et al., "Alternating d(G-C).sub.3 and d(C-G).sub.3 hexanucleotides containing 7-deaza-2'-deoxyguanosine or 8-aza-7-deaza-2'-deoxyguanosine in place of dG," Nucleic Acids Res., vol. 17(3):901-910 (1989).
van Ness et al., "The use of oligodeoxynucleotide probes in chaotrope-based hybridization solutions," Nucleic Acids Res., vol. 19(19):5143-5151 (1991).
Wittwer et al., "Continuous Fluorescence Monitoring of Rapid Cycle DNA Amplification," Biotechniques, vol. 22(1):130-138 (1997a).
Wittwer et ;al., "The Light Cycler.TM.: A Microvolume Multisample Fluorimeter with Rapid Temperature Control," Biotechniques, vol. 22(1):176-181 (1997b).
Afonina Irina A.
Kutyavin Igor V.
Meyer, Jr. Rich B.
Epoch Pharmaceuticals, Inc.
Marschel Ardin H.
LandOfFree
Oligonucleotides containing pyrazolo[3,4-D]pyrimidines for hybri does not yet have a rating. At this time, there are no reviews or comments for this patent.
If you have personal experience with Oligonucleotides containing pyrazolo[3,4-D]pyrimidines for hybri, we encourage you to share that experience with our LandOfFree.com community. Your opinion is very important and Oligonucleotides containing pyrazolo[3,4-D]pyrimidines for hybri will most certainly appreciate the feedback.
Profile ID: LFUS-PAI-O-193824