Nucleic acid encoding synthesis-deficient thermostable DNA polym

Organic compounds -- part of the class 532-570 series – Organic compounds – Carbohydrates or derivatives

Patent

Rate now

  [ 0.00 ] – not rated yet Voters 0   Comments 0

Details

4353201, 4352528, C12N 121, C12N 1500, C07H 2100, C07H 2104

Patent

active

055413110

ABSTRACT:
A means for cleaving a nucleic acid cleavage structure in a site-specific manner is disclosed. A cleaving enzyme having 5' nuclease activity without interfering nucleic acid synthetic ability is employed as the basis of a novel method of detection of specific nucleic acid sequences. Cleaving enzymes are produced through the use of novel DNA sequences which encode novel thermostable polymerases.

REFERENCES:
patent: 4683195 (1987-07-01), Mullis et al.
patent: 4683202 (1987-07-01), Mullis
patent: 5108892 (1992-04-01), Burke et al.
patent: 5144019 (1992-09-01), Rossi et al.
patent: 5210015 (1993-05-01), Gelfand et al.
Kunkel, Thomas A. Rapid and efficient site specific mutagenesis without phenotypic selection. Proc. Natl. Acad. Sci. USA. (Jan. 1985) 82:488-492.
European Patent 482714 (Abs) to Eastman Kodak Co. published Apr. 29, 1992. Mutant Thermus aquaticusDNA polymerase genes-used for producing thermostable . . . .
J. Marmur et al., "Strand Separation and Specific Recombination in Deoxyribonucleic Acids: Biological Studies," Proc. Natl. Acad. Sci. USA 46:453 (1960).
P. Doty et al., "Strand Separation and Specific Recombination in Deoxyribonucleic Acids: Physical Chemical Studies," Proc. Natl. Acad. Sci. USA 46:461 (1960).
M. Hayashi et al., "Restriction of In Vivo Genetic Transcription to One of the Complementary Strands of DNA," Proc. Natl. Acad. Sci. USA 50:664 (1963).
H. Smith et al., "A Restriction Enzyme from Hemophilus influenza," J. Mol. Biol. 51:379 (1970).
E. Southern, "Detection of Specific Sequences Among DNA Fragments Separated by Gel Electrophoresis," J. Mol Biol. 98:503 (1975).
R. Wallace et al., "Application of Synthetic Oligonucleotides to the Diagnosis of Human Genetic Diseases," Biochimie 67:755 (1985).
A. Studencki et al., "Allele-Specific Hybridization Using Oligonucleotide Probes of Very High Specific Activity: Discrimination of the Human .beta..sup.A -and .beta..sup.S -Globin Genes," DNA 3:7 (1984).
A. Studencki et al., "Discrimination among the Human .beta..sup.a, .beta.hu S, and .beta..sup.c -Globin Genes Using Allele-Specific Oligonucleotide Hybridization Probes," Am. J. Human Genetics 37:42 (1985).
R. Saiki, "The Design and Optimization of the PCR," PCR Technology--Principles and Applications for DNA Amplification(H. A. Erlich, Ed.), Stockton Press, New York, pp. 7-19 (1989).
P. Holland et al., "Detection of Specific Polymerase Chain Reaction Product by Utilizing the 5'-3' Exonuclease Activity of Thermus aquaticus DNA Polymerase," Proc. Natl. Acad. Sci. USA 88:7276 (1991).
R. Wallace et al., "Hybridization of Synthetic Oligodeoxyribonucleotides to .PHI..sub.x 174 DNA:the Effect of Single Base Pair Mismatch," Nucl. Acids Res. 6:3543 (1979).
R. Wallace et al., "The Use of Oligonucleotides as Hybridization Probes. II. Hybridization of Oligonucleotides of Mixed Sequence to Rabbit .beta.-Globin DNA," Nucl. Acids Res. 9:879 (1981).
R. Saiki et al., "Analysis of Enzymatically Amplified .beta.-globin and HLA-DQ.alpha. DNA with Allele-Specific Oligonucleotide Probes," Nature 324:163 (1986).
S. Kwok et al., "Effects of Primer-Template Mismatches on the Polymerase Chain Reaction: Human Immunodeficiency Virus Type I Model Studies," Nucl. Acids Res. 18:999 (1990).
A. Kornberg, DNA Replication, W. H. Freeman and Co., San Francisco, pp. 127-139 (1980).
K. Tindall et al., "Fidelity of DNA Synthesis by the Thermus aquaticus DNA Polymerase," Biochem. 27:6008 (1988).
D. Brutlag et al., "An Active Fragment of DNA Polymerase Produced by Proteolytic Cleavage," Biochem. Biophys. Res. Commun. 37:982 (1969).
H. Erlich et al., "Recent Advances in the Polymerase Chain Reaction," Science 252:1643 (1991).
P. Setlow et al., "Deoxyribonucleic Acid Polymerase: Two Distinct Enzymes in One Polypeptide-II. A Proteolytic Fragment Containing the 5'-3' Exonuclease Function. Restoration of Intact Enzyme Functions from the Two Proteolytic Fragments," J. Biol. Chem. 247:232 (1972).
D. Gelfand, "Taq DNA Polymerase," PCR Technology --Principles and Applications for DNA Amplification (H. A. Erlich, Ed.), Stockton Press, New York, p. 19 (1989).
F. Lawyer et al., "Isolation, Characterization, and Expression in Escherichia coli of the DNA Polymerase Gene from Thermus aquaticus," J. Biol. Chem. 264:6427 (1989).
A. Akhmetzjanov et al., "Molecular Cloning and Nucleotide Sequence of the DNA Polymerase Gene from Thermus flavus," Nucl. Acids Res. 20:5839 (1992).
P. Setlow et al., "Deoxyribonucleic Acid Polymerase: Two Distinct Enzymes in One Polypeptide--I. A Proteolytic Fragment Containing the Polymerase and 3'-5' Exonuclease Functions," J. Biol. Chem. 247:224 (1972).
R. Saiki et al., "Primer-Directed Enzymatic Amplification of DNA with a Thermostable DNA Polymerase," Science 239:487 (1988).
K. Mullis et al., "Specific Synthesis of DNA in Vitrovia a Polymerase-Catalyzed Chain Reaction," Methods in Enzymology 155:335 (1987).
F. Perler et al., "Intervening Sequences in an Archaea DNA Polymerase Gene," Proc. Natl. Acad. Sci. USA 89:5577 (1992).
A. Kaledin et al., "Isolation and Properties of DNA Polymerase from the Extremely Thermophilic Bacterium Thermus Flavus," Biokhimiya 46:1576 (1981).
N. Carballeira et al., "Purification of a Thermostable DNA Polymerase from Thermus thermophilus HB8, Useful in the Polymerase Chain Reaction," BioTechniques 9:276 (1990).
T. Myers et al., "Reverse Transcripton and DNA Amplification by a Thermus thermophilus DNA Polymerase," Biochem. 30:7661 (1991).
J. Ito et al., "Compilation and Alignment of DNA Polymerase Sequences," Nucl. Acids Res. 19:4045 (1991).
E. Mathur et al., "The DNA Polymerase Gene from the Hyperthermophilic Marine Archaebacterium, Pyrococcus furiosus, Shows Sequence Homology with .alpha.-like DNA Polymerases," Nucl. Acids. Res. 19:6952 (1991).
J. Dunn et al. "Complete Nucleotide Sequence of Bacteriophage T7 DNA and the Locations of T7 Genetic Elements," J. Mol. Biol. 166:477 (1983).
V. Antao et al., "A Thermodynamic Study of Unusually Stable RNA and DNA Hairpins," Nucl. Acids Res. 19:5901 (1991).
M. Stark, "Multicopy Expression Vectors Carrying the lac Repressor Gene for Regulated High-Level Expression of Genes in Escherichia coli," Gene 5:255 (1987).
F. Studier et al., "Use of Bacteriophage T7 RNA Polymerase to Direct Selective High-level Expression of Cloned Genes," J. Mol. Biol. 189:113 (1986).
D. Englke et al., "Purification of Thermus aquaticus DNA Polymerase Expressed in Escherichia coli," Anal. Biochem 191:396 (1990).
M. Orita et al., "Rapid and Simple Detection of Point Mutations and DNA Polymorphisms Using the Polymerase Chain Reactions," Genomics 5:874 (1989).
K. Hayashi, "PCR-SSCP: A Simple and Sensistive Method for Detection of Mutations in the Genomic DNA," PCR Meth. and Appl. 1:34 (1991).
M. Bergseid et al., "A High Fidelity Thermostable DNA Polymerase Isolated from Pyrococcus furiosus," Strategies (Stratagene, LaJolla, CA 4:34 (1991).
R. Kelly et al., "Excision of Thymine Dimers and Other Mismatched Sequences by DNA Polymerase of Escherichia coli," Nature 244:495 (1969).
A. Kornberg et al., "Enzymatic Synthesis of Deoxyribonucleic Acid, XVL Oligonucleotides as Templates and the Mechanism of Their Replication," Biochemistry 51:315 (1961).
A. Kornberg, "DNA Polymerases --A Perspective," The Enzymes, vol. XIV:3.
I. Lehman, "DNA Polymerase I of Escherichia coli," The Enzymes, vol. XIV:15.
P. Lopez et al., "Characterization of the polA Gene of Streptococcus pneumoniae and Comparison of the DNA Polymerase I It Encodes to Homologous Enzymes from Escherichia coli and Phage T7," J. Biol. Chem. 264:4255 (1989).
H. Schachman et al., "Enzymatic Synthesis of Deoxyribonucleic Acid," J. Biol. Chem. 235:3242 (1960).
R. Lundquist et al., "Transient Generation of Displaced Single-Stranded DNA During Nick Translation," Cell 31:53 (1982).
M. Innis et al., "DNA Sequencing with Thermus aquaticus DNA Polymerase and direct Sequencing of Polymerase Chain Reaction-Amplified DNA," Proc. Natl. Acad. Sci. USA 85:9436 (1988).
Perkin Elmer Cetus, Product Analysis: "AmpliTaq DNA Polymerase".
Promega, Product Analysis: "Taq DNA Polymerase", Certificate of Analysis.
M. Longl

LandOfFree

Say what you really think

Search LandOfFree.com for the USA inventors and patents. Rate them and share your experience with other people.

Rating

Nucleic acid encoding synthesis-deficient thermostable DNA polym does not yet have a rating. At this time, there are no reviews or comments for this patent.

If you have personal experience with Nucleic acid encoding synthesis-deficient thermostable DNA polym, we encourage you to share that experience with our LandOfFree.com community. Your opinion is very important and Nucleic acid encoding synthesis-deficient thermostable DNA polym will most certainly appreciate the feedback.

Rate now

     

Profile ID: LFUS-PAI-O-1659854

  Search
All data on this website is collected from public sources. Our data reflects the most accurate information available at the time of publication.