Methods for electronic fluorescent perturbation for analysis and

Chemistry: molecular biology and microbiology – Measuring or testing process involving enzymes or... – Involving nucleic acid

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436501, 422 50, 422 681, 422 69, 422 8205, 422 8206, 422 8207, 422 8208, 422129, C12Q 168

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active

060486902

ABSTRACT:
Methods for electronic perturbation of fluorescence, chemilluminescence and other emissive materials provide for molecular biological analysis. In a preferred method for hybridization analysis of a sample, an electronic stringency control device is used to perform the steps of: providing the sample, a first probe with a fluorescent label and a second probe with a label under hybridization conditions on the electronic stringency control device, forming a hybridization product, subjecting the hybridization product to an electric field force, monitoring the fluorescence from the hybridization product, and analyzing the fluorescent signal. The label preferably serves as a quencher for the fluorescent label. In yet another aspect of this invention, a method for achieving electronic fluorescence perturbation on an electronic stringency control device comprising the steps of: locating a first polynucleotide and a second polynucleotide adjacent the electronic stringency control device, the first polynucleotide and second polynucleotide being complementary over at least a portion of their lengths and forming a hybridization product, the hybridization product having an associated environmental sensitive emission label, subjecting the hybridization product and label to a varying electrophoretic force, monitoring the emission from the label, and analyzing the monitored emission to determine the electronic fluorescence perturbation effect. In yet another aspect of this invention, a method is provided for electronic perturbation catalysis of substrate molecules on an electronic control device containing at least one microlocation comprising the steps of: immobilizing on the microlocation an arrangement of one or more reactive groups, exposing the reactive groups to a solution containing the substrate molecules of interest, and applying an electronic pulsing sequence which causes charge separation between the reactive groups to produce a catalytic reaction on the substrate molecules.

REFERENCES:
patent: 3950738 (1976-04-01), Hayashi et al.
patent: 3995190 (1976-11-01), Salgo
patent: 4563419 (1986-01-01), Ranki et al.
patent: 4580895 (1986-04-01), Patel
patent: 4584075 (1986-04-01), Goldstein
patent: 4594135 (1986-06-01), Goldstein
patent: 4751177 (1988-06-01), Stabinsky
patent: 4787963 (1988-11-01), MacConnell
patent: 4816418 (1989-03-01), Mack et al.
patent: 4822566 (1989-04-01), Newman
patent: 4908112 (1990-03-01), Pace
patent: 5063081 (1991-11-01), Cozzette et al.
patent: 5075077 (1991-12-01), Durley, II et al.
patent: 5096669 (1992-03-01), Lauks et al.
patent: 5096807 (1992-03-01), Leaback
patent: 5125748 (1992-06-01), Bjornson et al.
patent: 5126022 (1992-06-01), Soane et al.
patent: 5143854 (1992-09-01), Pirrung et al.
patent: 5164319 (1992-11-01), Hafeman et al.
patent: 5166063 (1992-11-01), Johnson
patent: 5200051 (1993-04-01), Cozzette et al.
patent: 5202231 (1993-04-01), Drmanac et al.
patent: 5219726 (1993-06-01), Evans
patent: 5227265 (1993-07-01), DeBoer et al.
patent: 5234566 (1993-08-01), Osman et al.
patent: 5304487 (1994-04-01), Wilding et al.
patent: 5312527 (1994-05-01), Mikkelsen et al.
patent: 5434049 (1995-07-01), Okano et al.
patent: 5516698 (1996-05-01), Begg et al.
patent: 5532129 (1996-07-01), Heller
patent: 5565322 (1996-10-01), Heller
patent: 5605662 (1997-02-01), Heller et al.
patent: 5605839 (1997-02-01), Simpson et al.
patent: 5632957 (1997-05-01), Heller et al.
patent: 5681751 (1997-10-01), Begg et al.
patent: 5787032 (1998-07-01), Heller et al.
patent: 5849486 (1998-12-01), Heller et al.
patent: 5849489 (1998-12-01), Heller
patent: 5853668 (1998-12-01), Begg et al.
Matthews et al. (1988) Analytical Biochemistry, vol. 169, pp. 1-25.
Anand and Southern "Pulsed Field Gel Electrophoresis," Gel Electrophoresis of Nucleic Acids --A Practical Approach, 2d. Ed., D. Rickwood and B.D. Hames (New York:IRL Press 1990), pp. 101-123.
Anderson and Young, "Quantitive Filter Hybridization," Nucleic Acid Hybridization --A Practical Approach, Eds. B.D. Hames and S.J. Higgins (Washington, D.C.:IRL Press 1985) pp. 73-111.
Bains, "Setting a Sequence to Sequence a Sequence," Bio/Technology, 10:757-758 (1992).
Barinaga, "Will `DNA Chip` Speed Genome Initative?", Science, 253:1489 (1991).
Beattie et al., "Genosensor Technology," The 1992 San Diego Conference: Genetic Recognition, pp. 1-5 (Nov, 1992).
Beltz et al., "Isolation of Multigene Families and Determination of Homologies by Filter Hybrizidization Methods," Methods in Enzymology, 100:266-285 (1983).
Conner et al., "Detection of Sickle Cell .beta..sup.3 -Globin Allele by Hybridization With Synthetic Oligonucleotides," Proc. Natl. Acad, Sci. USA, 80:278-282 (1983).
Drmanac et al. "Sequencing of Megabase Plus DNA by Hybridization: Theory of the Method," Genomics, 4:114-128 (1989).
Drmanac et al., "DNA Sequence Determination by Hybridixation: A Strategy for Efficient Large-Scale Sequencing," Science, 260: 1649-1652 (1993).
Fodor et al., "Multiplexed Biochemical Assays With Biological Chips," Nature, 364:555-556 (1993).
Fodor et al., "Light-Directed, Spatially Addressable Parallel Chemical Synsthesis," Science, 251:767-773 (1992).
Horejsi, "Some Theoretical Aspects of Affinity Electrophoresis," Journal of Chromatography, 178:1-13 (1979).
Horejsi et al., Determining of Dissociation Constants of Lectin Sugar Complexes by Means of Affinity Electrophoresis, Biochimica at Biophysica Acta, 499:200-300 (1977).
Ranki et al., "Sandwich Hybridization as a Convenient Method for the Detection of Nucleic Acids in Crude Samples," Gene, 21:77-85 (1983).
Saiki, "Amplification of Genomic DNA, " PCR Protocols: A Guide to Methods and Applications, (Academic Press, Inc. 1990), pp 13-20.
Southern et al., "Analyzing and Comparing Nucleic Sequences by Hybridization to Arrays of Oligonucleotides Evaluation Using Experimental Models," Genomics, 13:1008-1017 (1992).
Strezoska et al., "DNA Sequencing by Hybridization: 100 Bases Read by a Non-Gel-Based Method", Proc. Natl. Acad. Sci. USA, 88:10089-93 (1991).
Wallace et al., "Hybridization of Synthetic Oligedexribonucleotides to .O slashed..times.174 DNA: The Effect of Single Base Pair Mismatch," Nucleic Acid Res., 6:3543-3557 (1979).
Washizu, "Electrostatic Manipulation of Biological Objects," Journal of Electrostatics, 25:109-123 (1990).
Washizu and Kurosawa, "Electrostatic Manipulation of DNA in Microfabricated Structures," IEEE Transactions on Industry Applications, 26:1165-1172 (1990).
Brown et al., "Electrochemically Induced Adsorption of Radio-Labelled DNA on Gold and HOPG Substrates for STM Investigations", Ultramicroscopy, 38 (1991) pp 253-264.
Palacek, "New Trends in Electrochemical Analysis of Nucleic Acids", Bioelectrochemistry and Bioenergetics, 20 (1988) pp 179-194.

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